SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G62020 | AT | Annotation by Michelle Graham. TAIR10: Coatomer, alpha subunit | chr1:22919814-22923728 FORWARD LENGTH=1216 | SoyBase | E_val: 0 | ISS |
| GO:0006886 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular protein transport | SoyBase | N/A | ISS |
| GO:0006888 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0009630 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gravitropism | SoyBase | N/A | ISS |
| GO:0016192 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0030244 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process | SoyBase | N/A | ISS |
| GO:0048193 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0030126 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: COPI vesicle coat | SoyBase | N/A | ISS |
| GO:0080008 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex | SoyBase | N/A | ISS |
| GO:0005198 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: structural molecule activity | SoyBase | N/A | ISS |
| GO:0005215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transporter activity | SoyBase | N/A | ISS |
| KOG0292 | KOG | Vesicle coat complex COPI, alpha subunit | JGI | ISS | |
| PTHR19876 | Panther | COATOMER | JGI | ISS | |
| PTHR19876:SF1 | Panther | COATOMER BETA SUBUNIT | JGI | ISS | |
| PF00400 | PFAM | WD domain, G-beta repeat | JGI | ISS | |
| PF04053 | PFAM | Coatomer WD associated region | JGI | ISS | |
| PF06957 | PFAM | Coatomer (COPI) alpha subunit C-terminus | JGI | ISS | |
| UniRef100_I1LCN7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LCN7_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q70I39 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Coatomer alpha subunit-like protein n=2 Tax=Lotus japonicus RepID=Q70I39_LOTJA | SoyBase | E_val: 0 | ISS |
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Glyma10g34310 not represented in the dataset |
Glyma10g34310 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g33270 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g199300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g34310.1 sequence type=CDS gene model=Glyma10g34310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTGACGAAATTCGAGACGAAGAGTAACAGAGTGAAGGGCCTGAGTTTCCACCCGAAGCGGCCATGGATCCTGGCGAGTCTCCACAGCGGCGTCATCCAGCTCTGGGACTACCGCATGGGAACCCTAATCGACAAGTTCGACGAGCACGACGGCCCCGTCCGCGGCGTCCATTTCCACCACTCCCAACCCCTCTTCGTCTCCGGAGGTGACGATTACAAAATCAAGGTGTGGAACTACAAGCTCCACCGCTGCCTCTTCACCCTCCTGGGCCACCTCGACTACATCCGCACCGTGCAGTTCCACCACGAGAATCCCTGGATTGTCAGCGCCAGCGACGACCAAACCATTCGCATCTGGAACTGGCAATCTCGCACTTGCATCTCCGTTTTGACTGGCCACAACCACTATGTCATGTGCGCTTTGTTCCATCCCAAAGAGGATCTCGTTGTGTCAGCTTCGCTCGACCAGACCGTTCGCGTCTGGGACATCAGCTCTCTCAAGCGGAAATCCGCGTCCCCGGCCGACGATATCCTGCGTCTCAGCCAGATGAACACTGATCTCTTCGGCGGCGTGGATGCCGTTGTTAAGTATGTTTTGGAAGGCCATGACCGCGGTGTTAATTGGGCTTCCTTCCATCCCACGCTGCCTCTCATTGTATCCGCTGCCGATGATCGCCAAGTCAAACTTTGGAGGATGAATGACACAAAGGCATGGGAAGTGGACACCTTGAGAGGGCACATGAATAATGTTTCATGTGTTATGTTCCATGCCAAGCAGGATATCATTGTGTCAAATTCCGAAGATAAAAGTATTCGCATATGGGATGCAACAAAGAGAACTGGAATTCAAACATTCCGCCGAGAGCATGACAGGTTTTGGATTCTTGCAGCCCATCCTGAAATGAATCTGCTGGCAGCTGGTCATGACAGTGGCATGATTGTTTTCAAGCTGGAGAGAGAAAGGCCTGCATTTGTTGTTAGTGGTGATTCATTGTTCTACACTAAAGATCGGTTCCTGTGTTTCTATGAATTTTCAACACAAAGAGATGCACAAGTACTTCCATTCCGACGACCGGGCTCTTTAAGCTTGAATCAAAGCCCAAAGACTCTTTCCTATAGCCCAACGGAAAATGCTTTTCTTCTGTGTTCAGATGTAGATGGTGGATCTTATGAGTTGTATTGCATATCAAAGGACAGTTATGGTAGGGGTGATGTGCAAGATGCAAAAAAAGGTCATGGAGCTTCTGCAGTCTTTGTGGCTCGTAATCGGTTTGCTGTGCTGGAGAAGAGCAGCAATCAAGTCCTTATAAAAAATTTGAAGAATGATATTGTTAAAAAGAGTGTCCTTCCGATTGCCACTGATGCTATATTCTATGCAGGAACAGGCAACTTGCTATGTAGGTCAGAGGATAGGGTTGTTATATTTGATCTTCAGCAGAGGATTGTTCTTGGTGAACTTCAGACCCCGTTTATTAAATATGTTGTCTGGTCTGATGACATGGAACATGTTGCTTTACTCAGCAAGCATGCCATTATAATTGCTAGCAAGAAACTTGTACACCAATGCACTCTCCATGAGACTATCCGTGTAAAAAGTGGAGCTTGGGATGAAAATGGTGTTTTCATTTATACAACACTAAATCACATCAAATATTGTCTTCCCAATGGAGATAATGGGATAATAAAGACATTGGACATTCCAATTTATATCACAAAGGTCTCTGGCAACACAATCTTCTGCTTGGATAGGGATGGAAAGAACAGATCAATAATTATTGATGCTACTGAATATATTTTTAAGCTTTCCCTCTTGAAGAAAAGATATGATCATGTCATGAACATGATAAGGAACTCACAGCTTTGTGGGCAGGCTATGATTGCTTATCTACAGCAGAAGGGCTTTCCTGAGGTTGCACTGCATTTTGTGAAAGATGAGAAAATTCGGTTCAATTTGGCTTTAGAGAGTGGGAACATTCAAATTGCAGTTGCTTCAGCAACAGCAATTGATGAGAAAGATCACTGGTACCGATTAGGGGTTGAGGCTCTTCGCCAAGGCAATGCTGGTATTGTAGAGTATGCATACCAGAGAACAAAAAATTTTGAGAGATTGTCTTTCCTTTATCTTGTCACTGGTAACATGGAGAAACTGTCCAAGATGTTGAAAATTGCTGAAGTCAAGAATGATGTGATGGGCCAGTTTCACAATGCCCTATATATGGGTGATGTTCGAGAACGTGTCAAGATATTGGAAAATGTGGGCCATTTGCCACTTGCTTACATCACTGCATCAGTCCATGGGCTACATGATGTTGCAGAGCGGCTTGCAACTGAACTGGGAGATAATGTTCCATCTTTGCCTGCAGGAAAAGTACCTTCTCTCATGATGCCTCCATCACCTGTCATTTGTGGAAGTGATTGGCCTCTTCTCAGGGTCATGCAAGGCATGTTTGATGGTGTGCTTGACAATACAGGTCGGGGAGTCGCTGATGAAGAAGAGTATGAGGCTGCTGATGGTGATTGGGGTGAGGAGCTTGACATAGTTGATGCAGATGGCTTACAAAATGGAGATGTTGCTGCGATTTTGGAGGATGGAGAGGTGGCTGAAGAAAATGATGAAGAGGGTGGATGGGAGATGGAGGATTTAGGCCTGGGCCCAGAAGCTGACACTCCCAAAGCTTCTATCAGTACCCAATCTTCAGTTTTTGTGACCCCAACACCTGGCATGCCGGTAAGTCATATATGGATTCAGAAATCATCTCTTGCAGCTGATCATGCAGCTGCTGGAAATTTTGATACTGCAATGAGGTTACTGAACCGGCAACTTGGGATAATGAATTTTGCCCCCCTGAAATCCATGTTTCTCGATCTTCATACTGGCAGTCATTCCTATCTCCGGGCATTTTCTTCTGCTCCCATTATATCACTTGCAGTTGAAAGAGGTTGGACTGAGTCATCTAGTGCTAATGTGAGAGGCCCACCGGCACTTCCTTTCAAATTGCCTCAGTTGGATGAAAAACTTAGAGCTGGTTATAAGCTTACCACTGCTGGGAAATTCACTGAAGCTCTTAAGACATTTGTTAATATTCTTCATACAATTCCTTTGATTGTTGTTGAGTCAAGGAGGGAAGTGGATGATGTGAAGGAACTAATTGTCATAGTCAAAGAGTATGTTTTGGGCATGCAGATGGAGCTGAAGAGGAGGGAAGTTAAGGACAATATAGTACGGCAGCAGGAGCTTGCAGCATATTTCACTCACTGCAACCTTCAGACACCTCACTTGAGGTTAGCTTTGCAGAATGCAATGACTGTCTGCTTCAAGGCAAAGAACCTTGCCACTGCTGCAAACTTTGCCCGGAGGCTACTTGAGACAAATCCTACCAATGAAAACCAAGCTAGGGCAGCAAGGCAAGTGGTAGCAGCTGCTGAAAAAACTATGACTGATGCTACCCAGTTGAACTATGATTTCCGCAACCCATTTGTAATTTGTGGTGCAACTTACGTGCCAATCTATCGAGGACAGAAGGATGTCTCTTGCCCATATTGTTCTTCACGTTTTGTGCCTAGCCAGGAGGGACAACTCTGTAATGTTTGCGATCTTGCAGTGATTGGAGCAGATGCTTCTGGTCTGGTTTGTTCACCTTCCCAGATACGCTGA
>Glyma10g34310.1 sequence type=predicted peptide gene model=Glyma10g34310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLTKFETKSNRVKGLSFHPKRPWILASLHSGVIQLWDYRMGTLIDKFDEHDGPVRGVHFHHSQPLFVSGGDDYKIKVWNYKLHRCLFTLLGHLDYIRTVQFHHENPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCALFHPKEDLVVSASLDQTVRVWDISSLKRKSASPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSAADDRQVKLWRMNDTKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRIWDATKRTGIQTFRREHDRFWILAAHPEMNLLAAGHDSGMIVFKLERERPAFVVSGDSLFYTKDRFLCFYEFSTQRDAQVLPFRRPGSLSLNQSPKTLSYSPTENAFLLCSDVDGGSYELYCISKDSYGRGDVQDAKKGHGASAVFVARNRFAVLEKSSNQVLIKNLKNDIVKKSVLPIATDAIFYAGTGNLLCRSEDRVVIFDLQQRIVLGELQTPFIKYVVWSDDMEHVALLSKHAIIIASKKLVHQCTLHETIRVKSGAWDENGVFIYTTLNHIKYCLPNGDNGIIKTLDIPIYITKVSGNTIFCLDRDGKNRSIIIDATEYIFKLSLLKKRYDHVMNMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDEKIRFNLALESGNIQIAVASATAIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLVTGNMEKLSKMLKIAEVKNDVMGQFHNALYMGDVRERVKILENVGHLPLAYITASVHGLHDVAERLATELGDNVPSLPAGKVPSLMMPPSPVICGSDWPLLRVMQGMFDGVLDNTGRGVADEEEYEAADGDWGEELDIVDADGLQNGDVAAILEDGEVAEENDEEGGWEMEDLGLGPEADTPKASISTQSSVFVTPTPGMPVSHIWIQKSSLAADHAAAGNFDTAMRLLNRQLGIMNFAPLKSMFLDLHTGSHSYLRAFSSAPIISLAVERGWTESSSANVRGPPALPFKLPQLDEKLRAGYKLTTAGKFTEALKTFVNILHTIPLIVVESRREVDDVKELIVIVKEYVLGMQMELKRREVKDNIVRQQELAAYFTHCNLQTPHLRLALQNAMTVCFKAKNLATAANFARRLLETNPTNENQARAARQVVAAAEKTMTDATQLNYDFRNPFVICGATYVPIYRGQKDVSCPYCSSRFVPSQEGQLCNVCDLAVIGADASGLVCSPSQIR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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