Glyma10g34250 - SoyBase

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Report for Sequence Feature Glyma10g34250

Feature Type:	gene_model
Chromosome:	Gm10
Start:	42421696
stop:	42428013
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g34250

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G22060	AT	Annotation by Michelle Graham. TAIR10: LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Repeat domains containing protein (TAIR:AT1G22000.1); Has 84739 Blast hits to 38714 proteins in 2257 species: Archae - 1436; Bacteria - 11314; Metazoa - 40747; Fungi - 7706; Plants - 4675; Viruses - 308; Other Eukaryotes - 18553 (source: NCBI BLink). \| chr1:7773373-7780586 REVERSE LENGTH=1999	SoyBase	E_val: 7.00E-19	ISS
GO:0010075	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
UniRef100_B3RH40	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RPG n=1 Tax=Medicago truncatula RepID=B3RH40_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233D7BB	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233D7BB related cluster n=1 Tax=unknown RepID=UPI000233D7BB	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g34250

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g34250

Paralog	Evidence	Comments
Glyma20g33295	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g34250 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g198700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g34250

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g34250

Limit To All Plant Sequences

>Glyma10g34250.2   sequence type=CDS   gene model=Glyma10g34250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAAGTGTTGAAGCCTATTATGAGAACGGGAAACAATTGAAGGATGGAAAAGGAAAGAGGAAAATATGCAATTTGAGTGGGCATAACAGAGATAAATTCCAGGAGAGATTGGATTTCAAATTCTATGATTTCCAAGCTCTGGAGATAGAAAAAGGGTGGAACAATCTTTTTGTTTCCATTATTAGTATAGAAACAGGGGAAACCATAGCTAAGTCTGGCAAAGCAGCAGTACAAAATGGAGAGTGTCATTGGGAAGACTCCATGCTAAGTACTATATGGATTTCTGATGATTCTCTACAAGATAATGAAGGCTTCCTCCTTAAGCTTGTTGTTGCCATGGGATCTGCCAGGTTTGGGACCCTTGGGGAGGCTACCATTAATTTAGCAAGTTACATTAGACCAGAAACTTCTACTGCATCATTGCCTTTGAGACAACATTGTTCCCATGGGACAATCTTACAAGTTAAAATACAGTGCTTGACCCCAAGAAGCAAATACAGGAAGGATGCAAATTCATATGTGGACGAAATGAGTGTTTGCTCTGATGATGTGGACAGCATATCCGATGTATCTGACAATACATTCAGCAGGACTAGTGGATCTTCACATTGGGACCATTTAGAAAATATATATTATCGAAGAGAACTTAGCAGTAAGAGAATAAGTCCACTTGCAACATGTTCAGATCACGAAATTGAGAGTTCCTTGTCCTTTTGGATTGGGATGTCTCCCCAACAAAGTAATGTCAGTGGATTGAAGAAGAATATGAATGAGAGACAAGATTCAACTTACTCTAAAAATGGCCCCTATCCACTCTATGATACCTCCAGATCAACATATTCATCCCCAGTAAGGTCAATTTCTGGGACACGGATGCAAGGTAAAATGGAAGAGCTTGGGAAAGTTTCAAATGCCAGTGAGACAAAGTTGACAAGGAGTGTTAGTTCATCTAAAGATCTCTTGGGTGTAGCACAAGTAACCATTGATTTACTTCATGGTGAAGCAAAGATGTGGGAAGAAAATGCTAGAAAGCTGATGGTTGATGTGGAGAGACTGCGGAAGCATTTAAGCAAGAAGTCAAAGAATAAAAAAGAACTTGAAATGGAGTTGTCAGCATCACACAAAGAGAGCGATGCACTGAAGGAAGAAATTCAGCGGCTAACCTCAATGGTGAAACAAAATGACAGCAGAAATCTTAAGTTCCAGATAGAAGAGATGGATAATACAATAAGGGAGTTGCAAGATGAGGTCAAGTATCAGAGAGGACTTAATCGTGACTTGGAGTTGAAGCTAACGAAACAACAGGAATCAAAGATTGATCTTGTTTCCATTCTCCAGAAACTACAGAAGATAAATGAAAAGCAGAAAATGGAGATGGCTGATCTATCAATGAATAGCTTGCGGTTTCAAGATGCTGAAATTAATAGCCGTGTGCTCGAAGACAGCGAGGAAGAGGATTTTAGTTTGAGCAAGGAAGTCCTACCAGAGAAAATGAGAAAGGAGTTTTGTCATTCAGATGCTGATCTTGGTACTTATGAAAATGCAATAAGATGCCTGCATGAAGGGATTGAACTACAGGAATTCCGGAACTGGGAGCTTGAGCACCAACTTATGCAGGAGAAACAAAAAAATATGGAAAGTACTATCCAGTTTCTGAAGAAAACTCTGGAAGAGAAAGATCAAGAGATGCAAACAGCAAGATGTTTTGTGACTCAAACATTAGAAGAAAATGAGGCAAAATGGAGGAATAGGCAGTTTGACAAAGGGAAACAAATCACCAACTTTGAAAACAAGTTATCCGATGGTGTTTATGCTTTTGGCAATGAAATCTTAGCTTTAACACAAAGGGTGCAAGATCTTGAAGCTGAATTTTGTGAGAAGCATAGAGAGTCCAGAAAGGATCTGATCATTTCTGGTTCCTTTTCTTCTAATTTTCCTCTGTTTGACTCTGATACTAATATCAACATCACTGAAGTGTTCCTTGAGTTATATAAGCAGCTTAAGCTTTCAGTAGAGAATCTGAGGGGTCAAGATCCTCTTTTGGGTCAAATGACATTAAACCAAAATGAGAGTTGTTTCAGTGTATCAGAGCTCTCAAAAGATGCAGGTAAAATAGATTTGAAGGAATTGACTGAGGCAATCCTGTGTAACATTATCATCTTGAAGAAGTCACTTGAAACAAAAGCTACTTCCTTTGAGTATGACATTAATTCTCAAGATGAGTTGGACGGGAGAAGAATCAGAGTTGATAATGCATTTCAGAATGAAGTAAGAGATTGCAGTCTAAAGGAAAATATATTCTGCATTTCCAGTCAGGAATTGAAAAATGTAAATGCAAAATTTGTATCTGATTTTCCGCCACCAACTAAAAATCAACAACAGGTTGAATCTGAAGAGACCAACAAGCTGAAATCTGACAATATGATAGGGAAGGAGAAATCCTGTCCAAGGTATTCCAAGCTAGAACTGGAAACTGAAGCTGCTTATCTGCAATCCAAAATTTCTTCAAATTGTTCAATTGATTTTCCAAATGACATGAAGTTTCATGATTTGACAGAGGATTCCCAGACTCTAATGAGCAAAGATGTTGTGAGGAATTTATCATTTGAAAGTTCTGATGATGAAGACAATGCTTTGTTTGGACTAAAAGCAGAAAATGTACAGTTGTATGAAAGAATGCTTGGCTTAGAAGCTGAAATGAGGCAATTGATTGAAGAAAAGGAGTCAACTCATTTAGCACGGGAGAATTATGAAAATGTTGTAAAAAATCTCCAGGCTGAGATCAGGAGAATGGAAGCATTAAACGAGGCACAAAAGGTTGAGTTGAAAAGAAAGGAGGAGAGCATGCAGAAAAAATGGATAGAGGTTCAAGAAGAGTGCAGCTTTCTGAGAGTAGCCAACTTGGAATTACAAGCTACAAATGGAAATTTGATTGAAGAATCTAAAACTTTTCAAACAACAAATGATGAGTTAAGAATGCAAAACTTGGAGTTGCATTGCCAATGTACAGTATTGGATTCTAAACTGGGGGAATCACAAATTGTATTTTCTGGTATGTTGAAACTAGTTGAAGAATTGGAATGCAAATTTACTTCAATGCTGGAAGATATTGCTTTGAAAGAAAAAACCATAGATGTAGACCTAGATGCCCTTCTTGAGGAAAGCAGAAAGCTAGATGAAAGGTTCACTATGGAAGAGAATTTTTTAACACACATGTATTTGGAAAAAACAGCTGAAGCAGGTAACTTGCAGAAGGAGGTTGAAGATCTAAGAGATCAGATATCTGGCATCTGCGATAGACACAAGAGGATGGCTTCTAATATTGTACTTGAGGTCTATGACTTATGTGCTGATAAAGCCATGCTTGAATCTGCTCTTCAAGAAGAACAGGAGAAAGCAAGGCTATACAACACCGAGCTTGATAATCTTGGAGCAGAATACGAAGTCATGGTGCAAAATTATGCTGAAGAGCTAGCTGCTTCCAGGGCAAACCAAGAAACTCTGATGGTTAATCATGAAAAAGTAGTTGTTTTGTTGGAAAACGTCAAATTAAATGACGAGAAATTGAAGGGCAGAGTTAGAGGGCTCGAGGCAGAACTGAAAGCCTCTGAACTTGAGAGGCTAAAAGCAACAGAAGAAATTTCTGAGCTAGAAGTCCAACTTCAGAAAACAGAAATGCTTCAAGATGAAATCTTTATCCTCAAGAGATCACTGTATGAAGCAGAATTTGAATTCAGAAGACTGGAAGCTTCATATCAGATGCTATCCTTAGAGTGTGATGAGCTGAAAGCTAAGAATGTATCTTACAATCGAAGAATCTCAACAACTGAGAAAGTTACATCAGAGCTGGAGGACTGCAAGCGTAGTAAAATTGAGCTTGAGGAAAAAAATTTACGGCTGCAATGGAATCTAACCATAAAAGAAGCTTCTGGTCACAATAATGGCTCAGTTAAAGTATGA

Predicted protein sequences of Glyma10g34250

Limit To All Plant Sequences

>Glyma10g34250.2   sequence type=predicted peptide   gene model=Glyma10g34250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSVEAYYENGKQLKDGKGKRKICNLSGHNRDKFQERLDFKFYDFQALEIEKGWNNLFVSIISIETGETIAKSGKAAVQNGECHWEDSMLSTIWISDDSLQDNEGFLLKLVVAMGSARFGTLGEATINLASYIRPETSTASLPLRQHCSHGTILQVKIQCLTPRSKYRKDANSYVDEMSVCSDDVDSISDVSDNTFSRTSGSSHWDHLENIYYRRELSSKRISPLATCSDHEIESSLSFWIGMSPQQSNVSGLKKNMNERQDSTYSKNGPYPLYDTSRSTYSSPVRSISGTRMQGKMEELGKVSNASETKLTRSVSSSKDLLGVAQVTIDLLHGEAKMWEENARKLMVDVERLRKHLSKKSKNKKELEMELSASHKESDALKEEIQRLTSMVKQNDSRNLKFQIEEMDNTIRELQDEVKYQRGLNRDLELKLTKQQESKIDLVSILQKLQKINEKQKMEMADLSMNSLRFQDAEINSRVLEDSEEEDFSLSKEVLPEKMRKEFCHSDADLGTYENAIRCLHEGIELQEFRNWELEHQLMQEKQKNMESTIQFLKKTLEEKDQEMQTARCFVTQTLEENEAKWRNRQFDKGKQITNFENKLSDGVYAFGNEILALTQRVQDLEAEFCEKHRESRKDLIISGSFSSNFPLFDSDTNINITEVFLELYKQLKLSVENLRGQDPLLGQMTLNQNESCFSVSELSKDAGKIDLKELTEAILCNIIILKKSLETKATSFEYDINSQDELDGRRIRVDNAFQNEVRDCSLKENIFCISSQELKNVNAKFVSDFPPPTKNQQQVESEETNKLKSDNMIGKEKSCPRYSKLELETEAAYLQSKISSNCSIDFPNDMKFHDLTEDSQTLMSKDVVRNLSFESSDDEDNALFGLKAENVQLYERMLGLEAEMRQLIEEKESTHLARENYENVVKNLQAEIRRMEALNEAQKVELKRKEESMQKKWIEVQEECSFLRVANLELQATNGNLIEESKTFQTTNDELRMQNLELHCQCTVLDSKLGESQIVFSGMLKLVEELECKFTSMLEDIALKEKTIDVDLDALLEESRKLDERFTMEENFLTHMYLEKTAEAGNLQKEVEDLRDQISGICDRHKRMASNIVLEVYDLCADKAMLESALQEEQEKARLYNTELDNLGAEYEVMVQNYAEELAASRANQETLMVNHEKVVVLLENVKLNDEKLKGRVRGLEAELKASELERLKATEEISELEVQLQKTEMLQDEIFILKRSLYEAEFEFRRLEASYQMLSLECDELKAKNVSYNRRISTTEKVTSELEDCKRSKIELEEKNLRLQWNLTIKEASGHNNGSVKV*

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