Glyma10g34240 - SoyBase

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Report for Sequence Feature Glyma10g34240

Feature Type:	gene_model
Chromosome:	Gm10
Start:	42413337
stop:	42419705
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g34240

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G04460	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein \| chr5:1260009-1263695 FORWARD LENGTH=863	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG4172	KOG	Predicted E3 ubiquitin ligase	JGI		ISS
PTHR12183	Panther	UNCHARACTERIZED RING ZINC FINGER-CONTAINING PROTEIN	JGI		ISS
PTHR12183:SF2	Panther	SUBFAMILY NOT NAMED	JGI		ISS
UniRef100_G8A1I5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein neuralized n=1 Tax=Medicago truncatula RepID=G8A1I5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233D515	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233D515 related cluster n=1 Tax=unknown RepID=UPI000233D515	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g34240

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g34240

Paralog	Evidence	Comments
Glyma20g33300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g34240 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g198600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g34240

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g34240

Limit To All Plant Sequences

>Glyma10g34240.1   sequence type=CDS   gene model=Glyma10g34240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAGATTTTCAGCCGTTACAGCAGAAGCCTGAGCCTGCTGATGCCCATGCCGAGTTTGAGCTTGGACTGGAGGAGTTTATGCGTGGGCACTTGGATGATTGTATGTCGTTTGCTTCGTGTAGCTCGTCCCGTGCACCGGATGATGAGGATGACGAGGGTGATCAGCTGGTTCGGAGGAGAAGGAGGTCTGACCTTGAAGGGGATGATTTGGCTGAGTCGTCGGCTGCACGCCGGCGGCATTCGAGGATTTTGAGCAGGTGGGCTGCACGGCAGGCACAGGAGATGATAACTACCATCGAGAGGAGGAATCGAGAGTCTGAGTTGATGGCGCTCGCGGGGTTGCATACTGTGTCAATGTTGGATTCTTCTTTTCTGAGGGGCTCGCAGTCTCCAACTTCTGGGCAGGAGGGGGCTGTGGAGAGGCCGAGCACTCAGGCATCTGCTATTCTGCAGATGTGGCGTGAGTTGGAAGATGAGCATTTGTTGAACCGGGCGCGTGAAAGGATGAGGGTAAGGTTGCGGCACCAGAGGAATTCTGACTCTCATACCAATGTGTCCAGTACCATGTCTGATAGTCGAGGCAGTGAGAATCAAGGAAGTTTGGGGGATGCAAGTGAAAGTGAAAATGATTATGGTACTTGGTCACATGATCAAACTGGATCAAGGAATGCACATGGGGATCATAATGGGTCTAGCAGGGAGCAATCTCTTGATCTTGGCGAAGTTGAGAGGGAGAGAGTTAGACAGATTGTTCAGGGATGGATGGAAAGCGGTATTAGTGATCATTCGTCTAATGTGAGTCAGATAAACAATAGCCGGAGAGCAGAATGGCTTGGAGAAACAGAGCGCGAGAGGGTAAGAAATATCAGGGAATGGGTGCAAATGATTAGCCAGCAGAGAGGTTCACGTGGGAGCCGGAGGGATGCTCAAGTAAGTGAGGGTGCCCAAGCTGATCGAGCTCGTGGCTTAGTAGCTGATAATGATGAGAGTCAGCCAGAGCATGTTCGGCGGGACATGTCAAGGTTGCGTGGAAGACAGGCTCTAGTTGATTTGCTTGTGAGGATAGAAAGGGAAAGACAAAGAGAGCTGCAGGGCTTGTTGGAGCACCGAGCTGTTTCTGATTTTGCTCATCGCAACCGTATTCAGTCACTGCTCAGAGGTAGATTCCTCCGAAATGAAAGAACTGTTGAAGATGAGAGGCCATTGTCTATGGCTGCAAGTGAATTAGTTCAGCTAAGACAACGACACACTGTCTCTGGTTTAAGGGAGGGTTTTCGTTCAAGATTAGAAAATATTGTTCGTGGTCAAGCAGGCACCAGTCCTGATACCACATCAAATAGTAATGCAAGTGAAACAAGAGGCGATGAGAGCCAAGCAAACAGTCTGGTAGATGGCCAACAAGAAAATTATGAACAACAGCAGATTAGGAGCCTGGAAACTGATGTGCGTCAGTTGCCTAATCGAACAGGAACTTTGGAGAGTAGCACAAGTGAGAGTATTAGTTGGCAAGAAGCTAGTAATCAAGGGGGGAATTGGCAGGAACAAATTGCTGAAGAAGGGGGAGGAAACTGGCGACAGAGTCCATTCAATCAGACAAGAGATGGAAGGGCAGTCGGTGATTGGCCACAGGAAACTCCCAGAAATTTAGCTGGGGAAGATCCTCATCCCCGGGAAGCTCAAAGAATTTGGCATGATGGTAACACTAGGGAAACTGTTGGTAATTGGTCCGAAGGACCTTCTGGAGCTACAAGGAATCGCCGTGGGGTTCCTATAAGAAGGTTCAATAGATTTCATCCACCTGATGATGATAATGTATACAGTATGGAGCTTAGAGAACTTCTGAGCAGGAGAAGTGTTTCTAACCTTCTTCGTAGTGGTTTCCGTGAAAGTCTGGACCAACTAATACAGTCATATGTGGAAAGGCAAGGTCGTGCACCAATTGACTGGGATTTGCATCAGAACTTACCAGCATCAACTCCTGCCTCTCCTGAACAGGACCCAGACCAGCAGGGTGAGGAACGAGATGAGGGTCAACATGAAACCATTAACAGACCTTCACTGGTGTTGCCTTCTCCACCAGTACCTCCACCACAACCTCTGTGGCACCAAGATTTGCATCAAACTGGATGGTCTCGCCATAGCATGCATCGTTCTGAAATTGAGTGGGAGATAATGAATGATTTAAGATCAGACATGGCAAGACTTCAGCAAGGCATGAATCACATGCAGAGGATGTTGGAGGCCTGCATGGATATGCAACTGGAGTTGCAGCGCTCTGTCAGACAGGAAGTATCTGCTGCTCTAAACCGCTCAGGTGGTGAGAATGGATCGAGTGCTGAGACATCTGATGATGGGTCTAAATGGGGGCATGTGAAGAAAGGAACTTGCTGTGTTTGTTGTGATAACCATATCGATTCTCTTTTGTATAGATGTGGGCACATGTGCACTTGTTCAAAATGTGCCAATGAGTTAATTCGTGGTGGTGGTAAATGTCCTTTATGCCGAGCACCAATTCTTGAGGTGGTCCGAGCATATTCCATACTGTAA

Predicted protein sequences of Glyma10g34240

Limit To All Plant Sequences

>Glyma10g34240.1   sequence type=predicted peptide   gene model=Glyma10g34240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTDFQPLQQKPEPADAHAEFELGLEEFMRGHLDDCMSFASCSSSRAPDDEDDEGDQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAARQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRGSQSPTSGQEGAVERPSTQASAILQMWRELEDEHLLNRARERMRVRLRHQRNSDSHTNVSSTMSDSRGSENQGSLGDASESENDYGTWSHDQTGSRNAHGDHNGSSREQSLDLGEVERERVRQIVQGWMESGISDHSSNVSQINNSRRAEWLGETERERVRNIREWVQMISQQRGSRGSRRDAQVSEGAQADRARGLVADNDESQPEHVRRDMSRLRGRQALVDLLVRIERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERTVEDERPLSMAASELVQLRQRHTVSGLREGFRSRLENIVRGQAGTSPDTTSNSNASETRGDESQANSLVDGQQENYEQQQIRSLETDVRQLPNRTGTLESSTSESISWQEASNQGGNWQEQIAEEGGGNWRQSPFNQTRDGRAVGDWPQETPRNLAGEDPHPREAQRIWHDGNTRETVGNWSEGPSGATRNRRGVPIRRFNRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQGRAPIDWDLHQNLPASTPASPEQDPDQQGEERDEGQHETINRPSLVLPSPPVPPPQPLWHQDLHQTGWSRHSMHRSEIEWEIMNDLRSDMARLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSGGENGSSAETSDDGSKWGHVKKGTCCVCCDNHIDSLLYRCGHMCTCSKCANELIRGGGKCPLCRAPILEVVRAYSIL*

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