SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G04430 | AT | Annotation by Michelle Graham. TAIR10: binding to TOMV RNA 1L (long form) | chr5:1250602-1253523 REVERSE LENGTH=334 | SoyBase | E_val: 2.00E-168 | ISS |
| GO:0008380 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA splicing | SoyBase | N/A | ISS |
| GO:0046719 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of viral protein levels in host cell | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0003727 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: single-stranded RNA binding | SoyBase | N/A | ISS |
| KOG2191 | KOG | RNA-binding protein NOVA1/PASILLA and related KH domain proteins | JGI | ISS | |
| PTHR10288 | Panther | RNA-BINDING PROTEIN RELATED | JGI | ISS | |
| PF00013 | PFAM | KH domain | JGI | ISS | |
| UniRef100_F4JW99 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Binding to TOMV RNA 1L (Long form) protein n=2 Tax=Arabidopsis thaliana RepID=F4JW99_ARATH | SoyBase | E_val: 1.00E-165 | ISS |
| UniRef100_I1LCN1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LCN1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma10g34220 not represented in the dataset |
Glyma10g34220 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g33330 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g198300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g34220.2 sequence type=transcript gene model=Glyma10g34220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AGAGTCACACCGACTCACACCTCACAACACGCACACTGACACGTCACACACACACACACACACACGCAACACAACAACGCAGAGAGAGAGAGAGACAAAGGTCACGTTGGATATGTAGCAGAACTGCTTCACCTTCTTCTCTTCTCTCCGCCTCCACCACCACTCCCTCACTCTCCACTCCCTCAATTCACAATCCTCACGTTGCCTCGTTCACATGAAACTCCTCTCGCCCTCCGTGTTCTCGCTCTCTCTCTGAATCACTCATCCTTATAATAAATAAATAATTTCTCGAAGAAGGAGAAAGAGGTTTTCATTGTTGTGGTTGTTGTAGAAGAAGAAGAAGCTGAAGAAGAATGGAGTCCACAGAATCTTCATACGTGTCTTCTCCCGAGGGACCGAGGAAGCACGCTGCATCGCCTCCTCCGAAATCGCCTTCGCTAGATTCTGAGGAGAAGCCAACATACATTAGGTTTCTAGTATCAAACTCTGCGGCTGGTTCAGTTATTGGAAAGGGCGGTTCAACTATCACTGATTTTCAGTCACAATCTGGAGCACGAATCCAGTTGTCACGTAATCATGAATTCTTTCCTGGAACTACTGATAGGATTATCATGGTATCTGGCGCAATAAATGAAATACAGAGGGCTGTAGAACTTATCCTTTCTAAGTTGCTCAGTGAGCTTCATAGTGAGGATGACAATGATGCTGAGCCAAAGACAAAAGTGAGACTCGTTGTTCCTAATGGTTCATGTGGTGGAATAATTGGCAAGGGAGGTGCTACCATTAGGTCATTCATTGAAGACTCTCAGGCTGGCATAAAGATATCTCCTCAAGATAATAATTACTATGGACAGAATGATAGGCTAGTGACGCTGACAGGATCTTTTGATGAACAGATGCGTGCAATTGAATTAATTGTTTCAAAGTTATCTGAAGATCCTCATTATGCACAGTCCATGAATTCTCCATTTTCATATCCTGGTTATCAGGGTGTTCCATACACATATGTGCTTCCGTCTGTTGCACCACCGGCATACAATGCAGTGAATTACAGACCAAATGGTGCTGCTGGAGGAAAGCTCCAGAACAGCAAGGAGGAGCGGAGTAACTCATTGACCATGGGTGTTGCAGATGAGCATATAGGATTGGTTGTTGGTCGTGGTGGAAGGAATATTATGGAAATTAGTCAGGCTAGTGGGGCAAGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGAACAACCGATAGGAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTATGATATTGCAGAAGGTTGCTTATGCTACCGAGAGGGGGGTGATGGAGTAGTTTGCTACTGCACTTGTCTGCTGTTAGATGCTTAATGAATCTGCTTGCTAATTGCTTATACATTTGCTGAATTTTGGGATTTGTTTGCATAAATTATCATCACTTATTATACCTTTGAAGATTTTTATTGTAGCGGGAGAGGGCAGGAATTTTTTTTTTCTTGAATTGAGAGCGGTCTTCTAGAATTTCTTCTCAAACCCCGTCATCAGACAAGTTCGATTGGAAAGTGCATTTGCACATTTCCAAAATGTAGTATTTAGAACTAAATTCTTTTTTTTGTAATTCAACAGGTGCTAATGTCATATATGATCTGTGTATCCTCAATCACTAGCCTGAGATAGGATATGAAAATTGTTTTGTGATAGCAACTGAGAATCAAGAATTCACTTGTGAGTTGTCAGAACCTCAGGCCCGTGTTGTGTTTCTAGTTTTTCATAGATTAATATGATGACGACTTATAGGCCACTATAGAATCTTTCTGTAGCAGTTTTGGCTTTTAGATGCACATTTTAGTGAAGTAATCTTGCTACTTTCAAACGGTGTTAAGTTTTCACCAAACCATTTACTTCACTATTAAGTCCGTGGTCCTTGCCCAATTGCACCATCCATCAATGGATCTGAGTTTTCTTTCCAGATCTACGTATTTTTTGTTTTATCCAGATCTGAAATTGGTGAAAAATGGTGCTTTGATTCTGGAATTGTAACTTTAACGGTGGTGATTGGTGGAGTAGAGGTCGGTTTCACTTCTTTTTTGGTCTTATTAGAGTTTGCTGCATGACAAGAACTATGGGTTGTCGGTGCAAAGAAAATGTGTTTGTCGCCAGTGTGGAGAGAATGCGTATGCCGTTGGTGCTGATGGTTGCTTGGACAACCGTGAGAGGCTGCATGGCGAGGACGGGTTTGCCGGTTTGGGAGAAAAACTTGTTCCCCAGTTTTCCGTTGGAAAATTTTCTGGATGATGGGGTGGGAGGAAGAAGATAAGGCTTAAGTTGTCATTTTTTTAATTGTTAAACAATAATTTAATTTTGAATTTCAGCTATTTCCTTTCAAAAAATAAAAAATAAAATTTCAGCT
>Glyma10g34220.1 sequence type=CDS gene model=Glyma10g34220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGTCCACAGAATCTTCATACGTGTCTTCTCCCGAGGGACCGAGGAAGCACGCTGCATCGCCTCCTCCGAAATCGCCTTCGCTAGATTCTGAGGAGAAGCCAACATACATTAGGTTTCTAGTATCAAACTCTGCGGCTGGTTCAGTTATTGGAAAGGGCGGTTCAACTATCACTGATTTTCAGTCACAATCTGGAGCACGAATCCAGTTGTCACGTAATCATGAATTCTTTCCTGGAACTACTGATAGGATTATCATGGTATCTGGCGCAATAAATGAAATACAGAGGGCTGTAGAACTTATCCTTTCTAAGTTGCTCAGTGAGCTTCATAGTGAGGATGACAATGATGCTGAGCCAAAGACAAAAGTGAGACTCGTTGTTCCTAATGGTTCATGTGGTGGAATAATTGGCAAGGGAGGTGCTACCATTAGGTCATTCATTGAAGACTCTCAGGCTGGCATAAAGATATCTCCTCAAGATAATAATTACTATGGACAGAATGATAGGCTAGTGACGCTGACAGGATCTTTTGATGAACAGATGCGTGCAATTGAATTAATTGTTTCAAAGTTATCTGAAGATCCTCATTATGCACAGTCCATGAATTCTCCATTTTCATATCCTGGTGTTTACTTCTCAGGTTATCAGGGTGTTCCATACACATATGTGCTTCCGTCTGTTGCACCACCGGCATACAATGCAGTGAATTACAGACCAAATGGTGCTGCTGGAGGAAAGCTCCAGAACAGCAAGGAGGAGCGGAGTAACTCATTGACCATGGGTGTTGCAGATGAGCATATAGGATTGGTTGTTGGTCGTGGTGGAAGGAATATTATGGAAATTAGTCAGGCTAGTGGGGCAAGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGAACAACCGATAGGAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTATGATATTGCAGAAGGTTGCTTATGCTACCGAGAGGGGGGTGATGGAGTAG >Glyma10g34220.2 sequence type=CDS gene model=Glyma10g34220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGTCCACAGAATCTTCATACGTGTCTTCTCCCGAGGGACCGAGGAAGCACGCTGCATCGCCTCCTCCGAAATCGCCTTCGCTAGATTCTGAGGAGAAGCCAACATACATTAGGTTTCTAGTATCAAACTCTGCGGCTGGTTCAGTTATTGGAAAGGGCGGTTCAACTATCACTGATTTTCAGTCACAATCTGGAGCACGAATCCAGTTGTCACGTAATCATGAATTCTTTCCTGGAACTACTGATAGGATTATCATGGTATCTGGCGCAATAAATGAAATACAGAGGGCTGTAGAACTTATCCTTTCTAAGTTGCTCAGTGAGCTTCATAGTGAGGATGACAATGATGCTGAGCCAAAGACAAAAGTGAGACTCGTTGTTCCTAATGGTTCATGTGGTGGAATAATTGGCAAGGGAGGTGCTACCATTAGGTCATTCATTGAAGACTCTCAGGCTGGCATAAAGATATCTCCTCAAGATAATAATTACTATGGACAGAATGATAGGCTAGTGACGCTGACAGGATCTTTTGATGAACAGATGCGTGCAATTGAATTAATTGTTTCAAAGTTATCTGAAGATCCTCATTATGCACAGTCCATGAATTCTCCATTTTCATATCCTGGTTATCAGGGTGTTCCATACACATATGTGCTTCCGTCTGTTGCACCACCGGCATACAATGCAGTGAATTACAGACCAAATGGTGCTGCTGGAGGAAAGCTCCAGAACAGCAAGGAGGAGCGGAGTAACTCATTGACCATGGGTGTTGCAGATGAGCATATAGGATTGGTTGTTGGTCGTGGTGGAAGGAATATTATGGAAATTAGTCAGGCTAGTGGGGCAAGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGAACAACCGATAGGAAAGTTACCATAACAGGATCCCAGAGAGCAATACGTACAGCTGAATCTATGATATTGCAGAAGGTTGCTTATGCTACCGAGAGGGGGGTGATGGAGTAG
>Glyma10g34220.1 sequence type=predicted peptide gene model=Glyma10g34220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MESTESSYVSSPEGPRKHAASPPPKSPSLDSEEKPTYIRFLVSNSAAGSVIGKGGSTITDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGAINEIQRAVELILSKLLSELHSEDDNDAEPKTKVRLVVPNGSCGGIIGKGGATIRSFIEDSQAGIKISPQDNNYYGQNDRLVTLTGSFDEQMRAIELIVSKLSEDPHYAQSMNSPFSYPGVYFSGYQGVPYTYVLPSVAPPAYNAVNYRPNGAAGGKLQNSKEERSNSLTMGVADEHIGLVVGRGGRNIMEISQASGARIKISDRGDYVSGTTDRKVTITGSQRAIRTAESMILQKVAYATERGVME* >Glyma10g34220.2 sequence type=predicted peptide gene model=Glyma10g34220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MESTESSYVSSPEGPRKHAASPPPKSPSLDSEEKPTYIRFLVSNSAAGSVIGKGGSTITDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGAINEIQRAVELILSKLLSELHSEDDNDAEPKTKVRLVVPNGSCGGIIGKGGATIRSFIEDSQAGIKISPQDNNYYGQNDRLVTLTGSFDEQMRAIELIVSKLSEDPHYAQSMNSPFSYPGYQGVPYTYVLPSVAPPAYNAVNYRPNGAAGGKLQNSKEERSNSLTMGVADEHIGLVVGRGGRNIMEISQASGARIKISDRGDYVSGTTDRKVTITGSQRAIRTAESMILQKVAYATERGVME*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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