Glyma10g34161 - SoyBase

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Report for Sequence Feature Glyma10g34161

Feature Type:	gene_model
Chromosome:	Gm10
Start:	42348671
stop:	42352705
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g34161

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G20510	AT	Annotation by Michelle Graham. TAIR10: OPC-8:0 CoA ligase1 \| chr1:7103645-7105856 REVERSE LENGTH=546	SoyBase	E_val: 1.00E-161	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009620	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fungus	SoyBase	N/A	ISS
GO:0009695	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process	SoyBase	N/A	ISS
GO:0009698	GO-bp	Annotation by Michelle Graham. GO Biological Process: phenylpropanoid metabolic process	SoyBase	N/A	ISS
GO:0009753	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0016207	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 4-coumarate-CoA ligase activity	SoyBase	N/A	ISS
KOG1176	KOG	Acyl-CoA synthetase	JGI		ISS
PTHR24096	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24096:SF43	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00501	PFAM	AMP-binding enzyme	JGI		ISS
UniRef100_G8A1G9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 4-coumarate-CoA ligase-like protein n=1 Tax=Medicago truncatula RepID=G8A1G9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1NHS0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1NHS0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g34161

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g34161 not represented in the dataset	Glyma10g34161 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g34161

Paralog	Evidence	Comments
Glyma20g33370	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g34161 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g197800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g34161

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g34161

Limit To All Plant Sequences

>Glyma10g34161.2   sequence type=transcript   gene model=Glyma10g34161   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGGTGGTCCTAGAGAAATTGATCGTAACGTACCATGGTGGCAGGGTTGTGCCCATGTCATTAAAATGTCAGGTGAGGAAATCTTGTCATCCAATGAAGAAAAATATAATAGATCTCAACCTCCATTTGGTAGCAGGAGTGGCTACAATTCAAGAACAGGCATTTATCACTCTCTAATTAAGCTTGGCATCAAGCATGAAATCCCAACAAGGCCTGATCTTAACACTGCCAATTTTGTGCTGTCACAGTTTCCACAAGCACACCTTGCTGAGGCAAGAATTGCATTCATTGATGCGAGAACTAATCTGAGTGTTAGCTATGGTGAGCTAAGACGGTCTATTTACTCCCTTGCATCAGCTTTGTTCCATGGACTTGAGGTTAGGAAAGGTGATGTGGTATTTGTATTGTCACCAAACTCAACCCTGTACTCAACCATATGCCTAGCTGTGTTATCAGTTGGAGCAGTTCTGACCACTGCCAACCCCATCAACACCGCAACGGAAATCGCGAAACAAGTGCACGATTCGAGTGCTAAACTAGCCATCTCAGCACCTGAGGAGCTACACAAGTTGGTCCCAACTGGGGTTCCTACCATTCTCACTTCTCATTGTTCTGATGGCAACATGTTATCAGTTGAAGAGTTAATAAAAGGCTGTTGTACTTCACCAGAGTTGCCTCAAGTTCCCGTGGCACAATCAGACACTGCTGCTATACTTTACTCTTCAGGAACCACAGGGGTAAGCAAAGGTGTGGTTCTGACACATGCAAATCTCATTTCCATAATGAGACTACTCTTGTGGTCTGCAGATGTAAGTGGATCCCAAGATGATGTTTTCTTGGCCTTCATTCCAATGTTTCACATCTATGGACTTGTGTTCTTTGGATTAGGATTGTTGTGTGTTGGTGTTACAACAATTTTGATGCAGAAATATGACTTCCAAGCTATGCTTGATGCCATCCAGAAGCACAAGGTGAATAACTTACCAGCAGTGCCACCAGTGATCCTTGCACTAGTAAAACATGCAAGGAAAGCTACGTGTGACTTATCCAGCCTAAGAAGGGTGGGGTCAGGTGCTGCACCTTTGAGCAAGGAAGTGGCACTAGAGTTTAGAAGGATGTTTCCATGGATTGAACTGAGGCAAGGTTATGGCCTAACAGAAAGTAGTGGTGGAGCAACATTTTTTGCCTCAGATAAAGATGCTAAAGCTCATCCAGATTCATGTGGGAAGTTGATTCCAACTTTTTGTGCAAAAGTTGTAGATATTGAAAAGGGGAAGCCTTTGCCTCCTCACAAAGAGGGAGAATTATGGTTCAAAAGTCCTACCATTATGAAAGGATATCTAGGAAATTTGGAGGCAACAAGTGCAGCAATTGATTCAGAAGGTTGGTTGAGGACTGGTGATCTTGGTTACATTGATGAGAATGGATTTGTTTATATAGTCGAACGAATAAAGGAGCTAATCAAGCACAATGGTTATCAGGTGGCTCCTGCAGAATTGGAATCTGTGCTGCTAAGTCACCCCCTTATAGTTGACGCAGCAGTTATACCGGTTGAAGATGAAGAAACTGGACAGATACCAATGGCATATGTGGTGAGAGCAGCTGGTTCTGAACTCTCAGAAAACCAAGTCATTCAATTTGTTGCAGGCCAGGTGGCTCCATATAAGAAAGTGAGAAAGGTGAGTTTCATTGACACTATTCCAAAGTCAGCTGCTGGCAAGATATTGCGGAAGGATCTTGTTTCTCAAAGCAAATATCAACTTGTCTCCAAGTTATGACTAACATGTATAAATGGTGGTATTAGTATTCCATAATGTTTTACTTGATTCTAAGATATCAAATAGTTAGTCTTAGATTTACTTAAGCAGGCTAAGGGTCTCAATTTTCCAGTGGATATTTAATGTTTGTAAAACTAGTAAAATCGGATTGGGCAAAATGAAGAGAAGAACACAGTGAAATCAGAACTCAACTTGGAGACTAAATACTTCTTTAATAAAAGAATATTTTGCCCTCGTCATTTTTATCTTATTGTGAGTTTGTGAATTCTGTATTGTTCTGTTGCCTTTTGAGGCTTTGGTGGCCTGTGGCACTACCATTTGCATTCTAGTTATGGATAAATATGAAGTTTGTATATATTGTGCAGAGACTTTCATTATACAAAGATTCATTCCTAGCTAAATATTTTT

Coding sequences of Glyma10g34161

Limit To All Plant Sequences

>Glyma10g34161.1   sequence type=CDS   gene model=Glyma10g34161   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGGTGAGGAAATCTTGTCATCCAATGAAGAAAAATATAATAGATCTCAACCTCCATTTGGTAGCAGGAGTGGCTACAATTCAAGAACAGGCATTTATCACTCTCTAATTAAGCTTGGCATCAAGCATGAAATCCCAACAAGGCCTGATCTTAACACTGCCAATTTTGTGCTGTCACAGTTTCCACAAGCACACCTTGCTGAGGCAAGAATTGCATTCATTGATGCGAGAACTAATCTGAGTGTTAGCTATGGTGAGCTAAGACGGTCTATTTACTCCCTTGCATCAGCTTTGTTCCATGGACTTGAGGTTAGGAAAGGTGATGTGGTATTTGTATTGTCACCAAACTCAACCCTGTACTCAACCATATGCCTAGCTGTGTTATCAGTTGGAGCAGTTCTGACCACTGCCAACCCCATCAACACCGCAACGGAAATCGCGAAACAAGTGCACGATTCGAGTGCTAAACTAGCCATCTCAGCACCTGAGGAGCTACACAAGTTGGTCCCAACTGGGGTTCCTACCATTCTCACTTCTCATTGTTCTGATGGCAACATGTTATCAGTTGAAGAGTTAATAAAAGGCTGTTGTACTTCACCAGAGTTGCCTCAAGTTCCCGTGGCACAATCAGACACTGCTGCTATACTTTACTCTTCAGGAACCACAGGGGTAAGCAAAGGTGTGGTTCTGACACATGCAAATCTCATTTCCATAATGAGACTACTCTTGTGGTCTGCAGATGTAAGTGGATCCCAAGATGATGTTTTCTTGGCCTTCATTCCAATGTTTCACATCTATGGACTTGTGTTCTTTGGATTAGGATTGTTGTGTGTTGGTGTTACAACAATTTTGATGCAGAAATATGACTTCCAAGCTATGCTTGATGCCATCCAGAAGCACAAGGTGAATAACTTACCAGCAGTGCCACCAGTGATCCTTGCACTAGTAAAACATGCAAGGAAAGCTACGTGTGACTTATCCAGCCTAAGAAGGGTGGGGTCAGGTGCTGCACCTTTGAGCAAGGAAGTGGCACTAGAGTTTAGAAGGATGTTTCCATGGATTGAACTGAGGCAAGGTTATGGCCTAACAGAAAGTAGTGGTGGAGCAACATTTTTTGCCTCAGATAAAGATGCTAAAGCTCATCCAGATTCATGTGGGAAGTTGATTCCAACTTTTTGTGCAAAAGTTGTAGATATTGAAAAGGGGAAGCCTTTGCCTCCTCACAAAGAGGGAGAATTATGGTTCAAAAGTCCTACCATTATGAAAGGATATCTAGGAAATTTGGAGGCAACAAGTGCAGCAATTGATTCAGAAGGTTGGTTGAGGACTGGTGATCTTGGTTACATTGATGAGAATGGATTTGTTTATATAGTCGAACGAATAAAGGAGCTAATCAAGCACAATGGTTATCAGGTGGCTCCTGCAGAATTGGAATCTGTGCTGCTAAGTCACCCCCTTATAGTTGACGCAGCAGTTATACCGGTTGAAGATGAAGAAACTGGACAGATACCAATGGCATATGTGGTGAGAGCAGCTGGTTCTGAACTCTCAGAAAACCAAGTCATTCAATTTGTTGCAGGCCAGGTGGCTCCATATAAGAAAGTGAGAAAGGTGAGTTTCATTGACACTATTCCAAAGTCAGCTGCTGGCAAGATATTGCGGAAGGATCTTGTTTCTCAAAGCAAATATCAACTTGTCTCCAAGTTATGA

>Glyma10g34161.2   sequence type=CDS   gene model=Glyma10g34161   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGGTGAGGAAATCTTGTCATCCAATGAAGAAAAATATAATAGATCTCAACCTCCATTTGGTAGCAGGAGTGGCTACAATTCAAGAACAGGCATTTATCACTCTCTAATTAAGCTTGGCATCAAGCATGAAATCCCAACAAGGCCTGATCTTAACACTGCCAATTTTGTGCTGTCACAGTTTCCACAAGCACACCTTGCTGAGGCAAGAATTGCATTCATTGATGCGAGAACTAATCTGAGTGTTAGCTATGGTGAGCTAAGACGGTCTATTTACTCCCTTGCATCAGCTTTGTTCCATGGACTTGAGGTTAGGAAAGGTGATGTGGTATTTGTATTGTCACCAAACTCAACCCTGTACTCAACCATATGCCTAGCTGTGTTATCAGTTGGAGCAGTTCTGACCACTGCCAACCCCATCAACACCGCAACGGAAATCGCGAAACAAGTGCACGATTCGAGTGCTAAACTAGCCATCTCAGCACCTGAGGAGCTACACAAGTTGGTCCCAACTGGGGTTCCTACCATTCTCACTTCTCATTGTTCTGATGGCAACATGTTATCAGTTGAAGAGTTAATAAAAGGCTGTTGTACTTCACCAGAGTTGCCTCAAGTTCCCGTGGCACAATCAGACACTGCTGCTATACTTTACTCTTCAGGAACCACAGGGGTAAGCAAAGGTGTGGTTCTGACACATGCAAATCTCATTTCCATAATGAGACTACTCTTGTGGTCTGCAGATGTAAGTGGATCCCAAGATGATGTTTTCTTGGCCTTCATTCCAATGTTTCACATCTATGGACTTGTGTTCTTTGGATTAGGATTGTTGTGTGTTGGTGTTACAACAATTTTGATGCAGAAATATGACTTCCAAGCTATGCTTGATGCCATCCAGAAGCACAAGGTGAATAACTTACCAGCAGTGCCACCAGTGATCCTTGCACTAGTAAAACATGCAAGGAAAGCTACGTGTGACTTATCCAGCCTAAGAAGGGTGGGGTCAGGTGCTGCACCTTTGAGCAAGGAAGTGGCACTAGAGTTTAGAAGGATGTTTCCATGGATTGAACTGAGGCAAGGTTATGGCCTAACAGAAAGTAGTGGTGGAGCAACATTTTTTGCCTCAGATAAAGATGCTAAAGCTCATCCAGATTCATGTGGGAAGTTGATTCCAACTTTTTGTGCAAAAGTTGTAGATATTGAAAAGGGGAAGCCTTTGCCTCCTCACAAAGAGGGAGAATTATGGTTCAAAAGTCCTACCATTATGAAAGGATATCTAGGAAATTTGGAGGCAACAAGTGCAGCAATTGATTCAGAAGGTTGGTTGAGGACTGGTGATCTTGGTTACATTGATGAGAATGGATTTGTTTATATAGTCGAACGAATAAAGGAGCTAATCAAGCACAATGGTTATCAGGTGGCTCCTGCAGAATTGGAATCTGTGCTGCTAAGTCACCCCCTTATAGTTGACGCAGCAGTTATACCGGTTGAAGATGAAGAAACTGGACAGATACCAATGGCATATGTGGTGAGAGCAGCTGGTTCTGAACTCTCAGAAAACCAAGTCATTCAATTTGTTGCAGGCCAGGTGGCTCCATATAAGAAAGTGAGAAAGGTGAGTTTCATTGACACTATTCCAAAGTCAGCTGCTGGCAAGATATTGCGGAAGGATCTTGTTTCTCAAAGCAAATATCAACTTGTCTCCAAGTTATGA

Predicted protein sequences of Glyma10g34161

Limit To All Plant Sequences

>Glyma10g34161.1   sequence type=predicted peptide   gene model=Glyma10g34161   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGEEILSSNEEKYNRSQPPFGSRSGYNSRTGIYHSLIKLGIKHEIPTRPDLNTANFVLSQFPQAHLAEARIAFIDARTNLSVSYGELRRSIYSLASALFHGLEVRKGDVVFVLSPNSTLYSTICLAVLSVGAVLTTANPINTATEIAKQVHDSSAKLAISAPEELHKLVPTGVPTILTSHCSDGNMLSVEELIKGCCTSPELPQVPVAQSDTAAILYSSGTTGVSKGVVLTHANLISIMRLLLWSADVSGSQDDVFLAFIPMFHIYGLVFFGLGLLCVGVTTILMQKYDFQAMLDAIQKHKVNNLPAVPPVILALVKHARKATCDLSSLRRVGSGAAPLSKEVALEFRRMFPWIELRQGYGLTESSGGATFFASDKDAKAHPDSCGKLIPTFCAKVVDIEKGKPLPPHKEGELWFKSPTIMKGYLGNLEATSAAIDSEGWLRTGDLGYIDENGFVYIVERIKELIKHNGYQVAPAELESVLLSHPLIVDAAVIPVEDEETGQIPMAYVVRAAGSELSENQVIQFVAGQVAPYKKVRKVSFIDTIPKSAAGKILRKDLVSQSKYQLVSKL*

>Glyma10g34161.2   sequence type=predicted peptide   gene model=Glyma10g34161   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGEEILSSNEEKYNRSQPPFGSRSGYNSRTGIYHSLIKLGIKHEIPTRPDLNTANFVLSQFPQAHLAEARIAFIDARTNLSVSYGELRRSIYSLASALFHGLEVRKGDVVFVLSPNSTLYSTICLAVLSVGAVLTTANPINTATEIAKQVHDSSAKLAISAPEELHKLVPTGVPTILTSHCSDGNMLSVEELIKGCCTSPELPQVPVAQSDTAAILYSSGTTGVSKGVVLTHANLISIMRLLLWSADVSGSQDDVFLAFIPMFHIYGLVFFGLGLLCVGVTTILMQKYDFQAMLDAIQKHKVNNLPAVPPVILALVKHARKATCDLSSLRRVGSGAAPLSKEVALEFRRMFPWIELRQGYGLTESSGGATFFASDKDAKAHPDSCGKLIPTFCAKVVDIEKGKPLPPHKEGELWFKSPTIMKGYLGNLEATSAAIDSEGWLRTGDLGYIDENGFVYIVERIKELIKHNGYQVAPAELESVLLSHPLIVDAAVIPVEDEETGQIPMAYVVRAAGSELSENQVIQFVAGQVAPYKKVRKVSFIDTIPKSAAGKILRKDLVSQSKYQLVSKL*

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