SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G18400 | AT | Annotation by Michelle Graham. TAIR10: ribosomal protein L6 family protein | chr2:7989665-7989973 REVERSE LENGTH=102 | SoyBase | E_val: 6.00E-60 | ISS |
| GO:0006354 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, elongation | SoyBase | N/A | ISS |
| GO:0006412 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translation | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005840 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: ribosome | SoyBase | N/A | ISS |
| GO:0015934 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: large ribosomal subunit | SoyBase | N/A | ISS |
| GO:0003735 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome | SoyBase | N/A | ISS |
| GO:0019843 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: rRNA binding | SoyBase | N/A | ISS |
| PTHR11655 | Panther | 60S RIBOSOMAL PROTEIN L9 FAMILY MEMBER | JGI | ISS | |
| PTHR11655:SF8 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00347 | PFAM | Ribosomal protein L6 | JGI | ISS | |
| UniRef100_B9SNA1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 50S ribosomal protein L6, putative n=1 Tax=Ricinus communis RepID=B9SNA1_RICCO | SoyBase | E_val: 3.00E-58 | ISS |
| UniRef100_I1LCL9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LCL9_SOYBN | SoyBase | E_val: 2.00E-67 | ISS |
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Glyma10g34090 not represented in the dataset |
Glyma10g34090 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g33491 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g197100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g34090.1 sequence type=CDS gene model=Glyma10g34090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGCCAAATTTTTTCGCTTTCTCAAGATTGTGGGTGTTGGATACAAAGCCAGAGCTGAAGCTGCAGGGCGTCTATTGTATCTCAAATTGGGATACAGTCATGAGGTGGAACTAGCCGTCCCTCCTGCTGTCCGAGTTTTCTGCTTCAAAAACAATGTAATTTGCTGTACTGGAATAGACAAACAAAGGGTGCACCAGTTTGCTGCTACTGTTCGGACTTGTAAGCCACCTGAAGTTTACAAAGGCAAGGGCATAATGTATGTTGATGAAGTGATCAAGAAAAAACAAGGAAAGAAATCTAAATAA
>Glyma10g34090.1 sequence type=predicted peptide gene model=Glyma10g34090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVIKKKQGKKSK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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