SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G04360 | AT | Annotation by Michelle Graham. TAIR10: limit dextrinase | chr5:1221566-1228399 FORWARD LENGTH=965 | SoyBase | E_val: 0 | ISS |
| GO:0000023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maltose metabolic process | SoyBase | N/A | ISS |
| GO:0000272 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polysaccharide catabolic process | SoyBase | N/A | ISS |
| GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
| GO:0005982 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch metabolic process | SoyBase | N/A | ISS |
| GO:0005983 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch catabolic process | SoyBase | N/A | ISS |
| GO:0006098 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt | SoyBase | N/A | ISS |
| GO:0009664 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization | SoyBase | N/A | ISS |
| GO:0015996 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chlorophyll catabolic process | SoyBase | N/A | ISS |
| GO:0016556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA modification | SoyBase | N/A | ISS |
| GO:0019252 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process | SoyBase | N/A | ISS |
| GO:0019288 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | SoyBase | N/A | ISS |
| GO:0019760 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucosinolate metabolic process | SoyBase | N/A | ISS |
| GO:0019761 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004553 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds | SoyBase | N/A | ISS |
| GO:0004556 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: alpha-amylase activity | SoyBase | N/A | ISS |
| GO:0010303 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: limit dextrinase activity | SoyBase | N/A | ISS |
| GO:0043169 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cation binding | SoyBase | N/A | ISS |
| GO:0051060 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pullulanase activity | SoyBase | N/A | ISS |
| KOG0470 | KOG | 1,4-alpha-glucan branching enzyme/starch branching enzyme II | JGI | ISS | |
| PTHR10357 | Panther | AMYLASE | JGI | ISS | |
| PTHR10357:SF22 | Panther | ALPHA-GLUCOSIDASE | JGI | ISS | |
| PF00128 | PFAM | Alpha amylase, catalytic domain | JGI | ISS | |
| PF02922 | PFAM | Carbohydrate-binding module 48 (Isoamylase N-terminal domain) | JGI | ISS | |
| PF11852 | PFAM | Domain of unknown function (DUF3372) | JGI | ISS | |
| UniRef100_B9T3G1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Pullulanase, putative n=1 Tax=Ricinus communis RepID=B9T3G1_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LCL8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LCL8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma10g34080 not represented in the dataset |
Glyma10g34080 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g197000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g34080.1 sequence type=CDS gene model=Glyma10g34080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCATCTGTTAGCATCATCCTCTTCTCTTTCTCCTTCTCTCCCTTCTTCATTCCCTCGCCCTTCTCTCCATCTCCACCTTCACTTTCCTTCCCAAACTACCCAGCTTCGCCTCCATACCCCACCACCCCTTTCTTGCTCCCTTAATTCTTCTTCTTCTTCTTCTTACGTGGAACAATCTGCTTCATCTTCTCAGATGCAGAATGGCTTGCTGTACTCCAGAGCTTATTGGGTTGCTGAATCTCTCATAGCTTGGGACGTGGATGTTGGAAACGGGTTTTCTTGCTACCTGCTTGCCAGCAAAAATGCTTCTTTGACCATTGCAAATTGCCAAATTCAAGGCGAGGATTTGAAAATTAAGCTTCAGGAGGATAGGGTTGGCCTTCCTGCAAATGTGGTGGAGAAATTTCCCCATATTCGAGGTCACAAAGTTTTCAGCCTGCCACCTACTTTGGATGTTAAGCCTCTTCTTAAATTCCGGTTAGCAGTTGTTATTTGTGATTCTGATGGGGAATGCATGAACTGTACTGGTTTGCAATTACCTGGTGTTTTAGATGACCTTTTCTCATATAGTGGTCCCCTTGGTGCACTTTTCTCAGAGGAAGCTGTGTCACTTTACCTGTGGGCACCTACTGCTCAAGCAGTGCATGCTTACATCTATAAGGACCCATCAGGAGATGATCCCATAGAAATTGTTTGCCTTGAGGAGGAAAATGGTGTTTGGAGAACTAAAGGACCAAAAAGTTGGGAAGGTTGTTACTATGTTTATGAAGTATGTGTTTACCACCCTAGCACTATGCGGATTGAAAAATGCTATACAAGTGATCCATATGCAAGAGGACTTTCATCAGATGGCAGGCGGAGTTTTCTGCTTAATCTTGACTCTGTTAAGTTAAAACCTGATGGATGGGATAATCTGGCAAATAAAAAACCTACTATACATTCTTTCTCTGATATAAGCATATATGAAATGCATATAAGGGATTTCAGTGCCAGTGACCTCTCTGTGCAACCTGAATTTCGTGGTGGTTATCTGGCCTTTACATTGCAGGATTCTGCGGGTGTACTTCATCTGAAGAAATTATCAAGTGCTGGTATCACTCATGTCCATCTATTGCCAACATTTCAGTTTGCTGGGGTTGATGATCAAAAGGAGGACTGGAGATTTGTAGATACCTCAATACTGGAAAGTTTGCCACCTGATTCAGATCAGCAACAAGCTCTCATCACAGCCATCCAAAACTTTGATGGTTACAACTGGGGGTACAACCCTGTTCTTTGGGGCGTTCCTAAAGGCAGCTATGCAAGTAATCCAAACGGTCCATACCGTACAATTGAGTTCCGAAAGATGGTTATGGCTCTTAACCATATCGGCCTCCGTGTTGTCTTGGATGTTGTCTACAATCATTTGCAAGGAAGTGGGCCTTTTGATGAACATTCTGTCCTTGATAAGATTGTTCCAGGTTACTATTTAAGAAGGAATAGTGATGGTTTAATCGAGCACAGTACTTGTATAAATAATACTGCTAGTGAGCACTTTATGGTTGAGCGTTTGATCCTTGATGATCTTGTACACTGGGCTGTCAATTACAAGATTGATGGGTTCAGATTTGATCTTATGGGCCATATAATGAAGAGCACAATGGTGAAAGCAAAAACTGCTCTCCAATGTTTAACAAAAGAAAAGGATGGACTTGATGGTTCAAGCATCTACATATATGGTGAAGGATGGGACTTTGGTGAAGTTGCCAAAAATGGCCGTGGGGTAAATGCTTCTCAGTTCAATCTCCCAGGAACACAAATTGGGAGCTTTAATGACCGAATTCGAGATGCCATACTTGGTGGATCTCCGTTTGGCCACCCTCTACAACAGGGTTTTGTGACTGGGCTACTCTTGCAGCCTAATGGCCATGACCATGGAACAGAAGCTAATGCGAAATCCATGCTTGCTGCATCAATGGATCACATCCAGATTGGAATGGCTGCAAACTTGAAGGATTTTGTGCTAACCAATTCTGAAGGGGAAGAGGTAAAAGGGTCAGAAATATTAACATATGGTGGGACACCTGTTGCATATGCCTCATGCCCCATAGAGACAATCAATTATGTTTCTGCTCATGACAATGAAACCCTATTTGACATTGTGAGCTTAAAGACTCCAATGGATATCAGTGTATCTGAGAGATGCAGGATAAACCATTTGGCAACCAGTATTATAGCATTATCACAGGGTATACCATTTTTTCATTCTGGAGATGAGATACTCCGCTCAAAATCACTGGATCGAGATTCTTACAATTCTGGTGATTGGTTCAACAGACTTGACTTCACATACAATAGTAATAATTGGGGTGTAGGACTTCCTCCACAAGAGAAAAATGAAAAGAACTGGCCACTAATCAAACCAAGACTGGCAAACCCATCCTTCAGGCCTCAGAAGACTGACATCCTTGCTACGGTGGACAATTTCTTGAACCTGCTGCGTATAAGATACTCTTCACCACTTTTCCGCTTGAAGACAGCTAACACTATCCAGGAACGAGTACGCTTTCACAACACTGGACCATCATGGGTTTGTGGAGTCATAGTGATGAGCATTGAAGATGGTCACAATGGCTTTCCTGGGTTGTCTCAGTTGGATCCCATATATTCGTTCATTGTGGTTGTTTTCAATGCGAGTCCAAAAGAAGTATCATTTGTTAGCCCTGCCCTGCAATTGAGAAATCTCCAGTTGCATCCCATACAGGTATCATCATCTGACGACCTTGTTAAGAGCTCAAGATATGAGGCATCTTCTGGCTGTTTTGTTGTGCCTCGAAGGACAACAGCTGTGTTTGTGGAGCCAAGGAAAACGTGA
>Glyma10g34080.1 sequence type=predicted peptide gene model=Glyma10g34080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MHLLASSSSLSPSLPSSFPRPSLHLHLHFPSQTTQLRLHTPPPLSCSLNSSSSSSYVEQSASSSQMQNGLLYSRAYWVAESLIAWDVDVGNGFSCYLLASKNASLTIANCQIQGEDLKIKLQEDRVGLPANVVEKFPHIRGHKVFSLPPTLDVKPLLKFRLAVVICDSDGECMNCTGLQLPGVLDDLFSYSGPLGALFSEEAVSLYLWAPTAQAVHAYIYKDPSGDDPIEIVCLEEENGVWRTKGPKSWEGCYYVYEVCVYHPSTMRIEKCYTSDPYARGLSSDGRRSFLLNLDSVKLKPDGWDNLANKKPTIHSFSDISIYEMHIRDFSASDLSVQPEFRGGYLAFTLQDSAGVLHLKKLSSAGITHVHLLPTFQFAGVDDQKEDWRFVDTSILESLPPDSDQQQALITAIQNFDGYNWGYNPVLWGVPKGSYASNPNGPYRTIEFRKMVMALNHIGLRVVLDVVYNHLQGSGPFDEHSVLDKIVPGYYLRRNSDGLIEHSTCINNTASEHFMVERLILDDLVHWAVNYKIDGFRFDLMGHIMKSTMVKAKTALQCLTKEKDGLDGSSIYIYGEGWDFGEVAKNGRGVNASQFNLPGTQIGSFNDRIRDAILGGSPFGHPLQQGFVTGLLLQPNGHDHGTEANAKSMLAASMDHIQIGMAANLKDFVLTNSEGEEVKGSEILTYGGTPVAYASCPIETINYVSAHDNETLFDIVSLKTPMDISVSERCRINHLATSIIALSQGIPFFHSGDEILRSKSLDRDSYNSGDWFNRLDFTYNSNNWGVGLPPQEKNEKNWPLIKPRLANPSFRPQKTDILATVDNFLNLLRIRYSSPLFRLKTANTIQERVRFHNTGPSWVCGVIVMSIEDGHNGFPGLSQLDPIYSFIVVVFNASPKEVSFVSPALQLRNLQLHPIQVSSSDDLVKSSRYEASSGCFVVPRRTTAVFVEPRKT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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