SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G04320 | AT | Annotation by Michelle Graham. TAIR10: Shugoshin C terminus | chr5:1209613-1212376 FORWARD LENGTH=470 | SoyBase | E_val: 7.00E-13 | ISS |
| GO:0006310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA recombination | SoyBase | N/A | ISS |
| GO:0006396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA processing | SoyBase | N/A | ISS |
| GO:0009165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0009887 | GO-bp | Annotation by Michelle Graham. GO Biological Process: organ morphogenesis | SoyBase | N/A | ISS |
| GO:0009888 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tissue development | SoyBase | N/A | ISS |
| GO:0010332 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to gamma radiation | SoyBase | N/A | ISS |
| GO:0010638 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of organelle organization | SoyBase | N/A | ISS |
| GO:0022402 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle process | SoyBase | N/A | ISS |
| GO:0032204 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of telomere maintenance | SoyBase | N/A | ISS |
| GO:0033044 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization | SoyBase | N/A | ISS |
| GO:0043247 | GO-bp | Annotation by Michelle Graham. GO Biological Process: telomere maintenance in response to DNA damage | SoyBase | N/A | ISS |
| GO:0045132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation | SoyBase | N/A | ISS |
| GO:0000775 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chromosome, centromeric region | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PF07557 | PFAM | Shugoshin C terminus | JGI | ISS | |
| UniRef100_B9SCJ5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Shugoshin-1, putative n=1 Tax=Ricinus communis RepID=B9SCJ5_RICCO | SoyBase | E_val: 5.00E-21 | ISS |
| UniRef100_I1LCL1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LCL1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma10g34030 not represented in the dataset |
Glyma10g34030 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g33560 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g196400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g34030.2 sequence type=transcript gene model=Glyma10g34030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAAAGATTCAAAATAGAGGTTCGGAGTTAGGGTCGGAAAGCCGTTTGTTTGTAATTTCTTGAGTCGTGACTCGTGACGATTCCGATAATCCCTCTCAATTCACAAACACGCCCAGAGAGAGAGAGAGAGAGTTGTGGAAATGGAAGAAGGTGTTGGCGCCATCTTTCTCGACTCCAATTCAGAGACTGTCGGACTTGGAGGTACAAAAGCAAAGAAAGTGAAAGTGCTGAAGGGAGATTCCGTTCCTGTTGGAACGGAAGTGAGAGCGAACGTGGGAGCTTCCCAGAACAAAATTCTTGCTGACATAAGCAACTTTCCCCAACAACCAAAGCAACACATCTCTGTTGACCACCTTCTCAAGGAAAAGGAAATTTTGATCAAGCATCTTGCTACTAGAGATGCCGTTATAGAATCGTGTAAAGCTGAGCTACACAAGTGTCAAACCAACTTTCAGAAACTAAGGAAGCAAAATGCAGAACTTGCCCTCACAAATAGTCAAATGCTGGTGGAGCTTAATTCTAGTAGACAGAAGCAAAGGGAACTTCAGCTTGAACTAGGAAGCAAAAATGGTGTACTCAATGCTATGAGATTAGAATTGACGCTAAAAAAGCAAACAGTTAAATCGAAGCATGAAACTGATGCAAATGAGGTGAGAGCATGTCAGAGTAAGCAGTCAGATCAGTCATTGCAAGAAGATAACAAGGGGAATGCAAAAAGGAAGAGAGTGTCCAAATCTCAATCTTCTGCACCTGCTGTCATTAAACAAGTCAAATCCACCAAAAAGGTCGAGAATCAGAGGTATAGTTTGCGAAGGCAATCTGCAGGATTGAAAGCTGAAAAACCTGAACCAACAAAAGATTTCTTGGAGGTAGTTGATATTTCACATCTACAAGAAAATTCGGCCAATGAAAATGGACCAGCATCATTGGGGTCCAAGGTCCATGAGGAAGCCAGAGAAGCTACTGAATCTTCGAGACCTACTAACCCTGAACAAGTTCATGTTAAAAAGAATGTTGAGAAGAAGAGGCAGAGTATGAGAAGACAAACTAACAGGTTCAGGCCAGAGAATCCAGAACCAGCTGAAGACTGCTTTAAGACAGATGATGCAAAATTTAATGTCTCCCAATTATCTGATAATATGTCAGAAAAAAATTGTCCAACAACATCAACTGTAACTTCTGAACAAGAAAATGATGCCTGTATATTTGAGCCTCAGGAAACTCGTAGATCATCTGTTGGGCGGCCATTGCGTCGGACAGTTGAGAAGATTGTGTCCTACAAGGAAGTTCCAGTTAACCGGAAGATGCGCAGAGATAAATTAGGGATTTTCATATCAGGTTCTCACTCAGTTACCAATAACTCTGTATAGAAGCGTGATGTGGAAACTGCAAAGCATGATATGCCCTACGTCCGGATGCTATAGTGCATGGTGATAGGGTTCTATTGAACTTTTTTTTTTAATAGCTTCTTGTTTAGGGCTTTGCATCATTGAGAACTGATGTACTTTATTATGATCATCTTTAGATGATAAATTGATAATATTTGATCCATTTGTTGATTTC
>Glyma10g34030.1 sequence type=CDS gene model=Glyma10g34030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGAAGGTGTTGGCGCCATCTTTCTCGACTCCAATTCAGAGACTGTCGGACTTGGAGGTACAAAAGCAAAGAAAGTGAAAGTGCTGAAGGGAGATTCCGTTCCTGTTGGAACGGAAGTGAGAGCGAACGTGGGAGCTTCCCAGAACAAAATTCTTGCTGACATAAGCAACTTTCCCCAACAACCAAAGCAACACATCTCTGTTGACCACCTTCTCAAGGAAAAGGAAATTTTGATCAAGCATCTTGCTACTAGAGATGCCGTTATAGAATCGTGTAAAGCTGAGCTACACAAGTGTCAAACCAACTTTCAGAAACTAAGGAAGCAAAATGCAGAACTTGCCCTCACAAATAGTCAAATGCTGGTGGAGCTTAATTCTAGTAGACAGAAGCAAAGGGAACTTCAGCTTGAACTAGGAAGCAAAAATGGTGTACTCAATGCTATGAGATTAGAATTGACGCTAAAAAAGCAAACAGTTAAATCGAAGCATGAAACTGATGCAAATGAGGTGAGAGCATGTCAGAGTAAGCAGTCAGATCAGTCATTGCAAGAAGATAACAAGGGGAATGCAAAAAGGAAGAGAGTGTCCAAATCTCAATCTTCTGCACCTGCTGTCATTAAACAAGTCAAATCCACCAAAAAGGTCGAGAATCAGAGGTATAGTTTGCGAAGGCAATCTGCAGGATTGAAAGCTGAAAAACCTGAACCAACAAAAGATTTCTTGGAGGTAGTTGATATTTCACATCTACAAGAAAATTCGGCCAATGAAAATGGACCAGCATCATTGGGGTCCAAGGTCCATGAGGAAGCCAGAGAAGCTACTGAATGTAACTGTACACAACTTGTTTCATTTTGTTACTTTATCTTTCAGTTTTGCTATATCAAGCCTTGTATATATTGTTTGTATGCAGCTTCGAGACCTACTAACCCTGAACAAGTTCATGTTAAAAAGAATGTTGAGAAGAAGAGGCAGAGTATGAGAAGACAAACTAACAGGTTCAGGCCAGAGAATCCAGAACCAGCTGAAGACTGCTTTAAGACAGATGATGCAAAATTTAATGTCTCCCAATTATCTGATAATATGTCAGAAAAAAATTGTCCAACAACATCAACTGTAACTTCTGAACAAGAAAATGATGCCTGTATATTTGAGCCTCAGGAAACTCGTAGATCATCTGTTGGGCGGCCATTGCGTCGGACAGTTGAGAAGATTGTGTCCTACAAGGAAGTTCCAGTTAACCGGAAGATGCGCAGAGATAAATTAGGGATTTTCATATCAGGTTCTCACTCAGTTACCAATAACTCTGTATAG >Glyma10g34030.2 sequence type=CDS gene model=Glyma10g34030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGAAGGTGTTGGCGCCATCTTTCTCGACTCCAATTCAGAGACTGTCGGACTTGGAGGTACAAAAGCAAAGAAAGTGAAAGTGCTGAAGGGAGATTCCGTTCCTGTTGGAACGGAAGTGAGAGCGAACGTGGGAGCTTCCCAGAACAAAATTCTTGCTGACATAAGCAACTTTCCCCAACAACCAAAGCAACACATCTCTGTTGACCACCTTCTCAAGGAAAAGGAAATTTTGATCAAGCATCTTGCTACTAGAGATGCCGTTATAGAATCGTGTAAAGCTGAGCTACACAAGTGTCAAACCAACTTTCAGAAACTAAGGAAGCAAAATGCAGAACTTGCCCTCACAAATAGTCAAATGCTGGTGGAGCTTAATTCTAGTAGACAGAAGCAAAGGGAACTTCAGCTTGAACTAGGAAGCAAAAATGGTGTACTCAATGCTATGAGATTAGAATTGACGCTAAAAAAGCAAACAGTTAAATCGAAGCATGAAACTGATGCAAATGAGGTGAGAGCATGTCAGAGTAAGCAGTCAGATCAGTCATTGCAAGAAGATAACAAGGGGAATGCAAAAAGGAAGAGAGTGTCCAAATCTCAATCTTCTGCACCTGCTGTCATTAAACAAGTCAAATCCACCAAAAAGGTCGAGAATCAGAGGTATAGTTTGCGAAGGCAATCTGCAGGATTGAAAGCTGAAAAACCTGAACCAACAAAAGATTTCTTGGAGGTAGTTGATATTTCACATCTACAAGAAAATTCGGCCAATGAAAATGGACCAGCATCATTGGGGTCCAAGGTCCATGAGGAAGCCAGAGAAGCTACTGAATCTTCGAGACCTACTAACCCTGAACAAGTTCATGTTAAAAAGAATGTTGAGAAGAAGAGGCAGAGTATGAGAAGACAAACTAACAGGTTCAGGCCAGAGAATCCAGAACCAGCTGAAGACTGCTTTAAGACAGATGATGCAAAATTTAATGTCTCCCAATTATCTGATAATATGTCAGAAAAAAATTGTCCAACAACATCAACTGTAACTTCTGAACAAGAAAATGATGCCTGTATATTTGAGCCTCAGGAAACTCGTAGATCATCTGTTGGGCGGCCATTGCGTCGGACAGTTGAGAAGATTGTGTCCTACAAGGAAGTTCCAGTTAACCGGAAGATGCGCAGAGATAAATTAGGGATTTTCATATCAGGTTCTCACTCAGTTACCAATAACTCTGTATAG
>Glyma10g34030.1 sequence type=predicted peptide gene model=Glyma10g34030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEEGVGAIFLDSNSETVGLGGTKAKKVKVLKGDSVPVGTEVRANVGASQNKILADISNFPQQPKQHISVDHLLKEKEILIKHLATRDAVIESCKAELHKCQTNFQKLRKQNAELALTNSQMLVELNSSRQKQRELQLELGSKNGVLNAMRLELTLKKQTVKSKHETDANEVRACQSKQSDQSLQEDNKGNAKRKRVSKSQSSAPAVIKQVKSTKKVENQRYSLRRQSAGLKAEKPEPTKDFLEVVDISHLQENSANENGPASLGSKVHEEAREATECNCTQLVSFCYFIFQFCYIKPCIYCLYAASRPTNPEQVHVKKNVEKKRQSMRRQTNRFRPENPEPAEDCFKTDDAKFNVSQLSDNMSEKNCPTTSTVTSEQENDACIFEPQETRRSSVGRPLRRTVEKIVSYKEVPVNRKMRRDKLGIFISGSHSVTNNSV* >Glyma10g34030.2 sequence type=predicted peptide gene model=Glyma10g34030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEEGVGAIFLDSNSETVGLGGTKAKKVKVLKGDSVPVGTEVRANVGASQNKILADISNFPQQPKQHISVDHLLKEKEILIKHLATRDAVIESCKAELHKCQTNFQKLRKQNAELALTNSQMLVELNSSRQKQRELQLELGSKNGVLNAMRLELTLKKQTVKSKHETDANEVRACQSKQSDQSLQEDNKGNAKRKRVSKSQSSAPAVIKQVKSTKKVENQRYSLRRQSAGLKAEKPEPTKDFLEVVDISHLQENSANENGPASLGSKVHEEAREATESSRPTNPEQVHVKKNVEKKRQSMRRQTNRFRPENPEPAEDCFKTDDAKFNVSQLSDNMSEKNCPTTSTVTSEQENDACIFEPQETRRSSVGRPLRRTVEKIVSYKEVPVNRKMRRDKLGIFISGSHSVTNNSV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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