SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G38680 | AT | Annotation by Michelle Graham. TAIR10: 5'-nucleotidases;magnesium ion binding | chr2:16174011-16175873 REVERSE LENGTH=315 | SoyBase | E_val: 8.00E-118 | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0000287 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding | SoyBase | N/A | ISS |
| GO:0008253 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 5'-nucleotidase activity | SoyBase | N/A | ISS |
| KOG3128 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR13045 | Panther | NT5C3 HYDROLASE | JGI | ISS | |
| PF05822 | PFAM | Pyrimidine 5'-nucleotidase (UMPH-1) | JGI | ISS | |
| UniRef100_G7I312 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cytosolic 5'-nucleotidase III-like protein n=1 Tax=Medicago truncatula RepID=G7I312_MEDTR | SoyBase | E_val: 2.00E-134 | ISS |
| UniRef100_I1LCK0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LCK0_SOYBN | SoyBase | E_val: 8.00E-165 | ISS |
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Glyma10g33906 not represented in the dataset |
Glyma10g33906 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g33690 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g195000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g33906.1 sequence type=CDS gene model=Glyma10g33906 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTGTGTTAACAGATTCCTGCTACCGGGTGATTGCTGATTTTGATGCTACGTTGACAATGTTTTGGGTTAATGGAACTCGTGGCCAAACCAGTCATGGTCTTTTGCAGCAGGGTAATCCAGATTATAATGCCAAAAGGCAGCAGTTATATGAATATTACCATCCATTAGAGTTTTCGCCAAATATTGGACTTGAAGAGAAAACAAAGCTCATGGAAGAGTGGTGGGGAAAGGCACATGGTCTTCTTGTTGAGGGAGGACTTACATATGACTCAATAAGACAATCAGTTGCTAATGCCAACATAGCTTTCAGGGAAGGTGTTTGTGAACTTTTTGAGTTTTTGGAGGAAAGAGATGCTCCTGTGTTGATATTCTCAGCAGGGCTTGCTGATATCATTGAAGAGGTCCTAAGGCAGAAACTTCACAGATCCTTCAAGAATGTGAGGATAGTATCCAACAGGATGGTATTTGATGATGATGGCCGCCTTGTAACTTTTAAAGGAAAATTGATTCATAGCTTAAATAAAAATGAGCATGCTCTTGACATGGCTGCTCCTGTTCATGAGAGATTGGGTGATATGGATGAAGAGAACCAATGTTTCCTTCTCGGTGATCACACCGGAGACTTGGGAATGTCTGATGGTTTGAATTATGAGCCTTGCCAAATTTCTGTTCTTCTAATTACTTGGAATGATGCACCCATGTGGGGAGTTATCAAACTGGTCTCTCATATGTGTTCAAGTGGGAGCATTCGTTTTTCAGTGGTTTACTTGGCCTTCAATTGTCGTCGTGTTGTGGATTTCAACGCTAGCTTTGATCCATGA
>Glyma10g33906.1 sequence type=predicted peptide gene model=Glyma10g33906 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVVLTDSCYRVIADFDATLTMFWVNGTRGQTSHGLLQQGNPDYNAKRQQLYEYYHPLEFSPNIGLEEKTKLMEEWWGKAHGLLVEGGLTYDSIRQSVANANIAFREGVCELFEFLEERDAPVLIFSAGLADIIEEVLRQKLHRSFKNVRIVSNRMVFDDDGRLVTFKGKLIHSLNKNEHALDMAAPVHERLGDMDEENQCFLLGDHTGDLGMSDGLNYEPCQISVLLITWNDAPMWGVIKLVSHMCSSGSIRFSVVYLAFNCRRVVDFNASFDP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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