Glyma10g33880 - SoyBase

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Report for Sequence Feature Glyma10g33880

Feature Type:	gene_model
Chromosome:	Gm10
Start:	42106329
stop:	42113468
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g33880

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G10650	AT	Annotation by Michelle Graham. TAIR10: BEST Arabidopsis thaliana protein match is: nucleoporin-related (TAIR:AT5G20200.1); Has 61042 Blast hits to 31782 proteins in 2093 species: Archae - 202; Bacteria - 16480; Metazoa - 16017; Fungi - 12552; Plants - 1653; Viruses - 629; Other Eukaryotes - 13509 (source: NCBI BLink). \| chr3:3325562-3330819 REVERSE LENGTH=1309	SoyBase	E_val: 6.00E-100	ISS
GO:0006997	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleus organization	SoyBase	N/A	ISS
GO:0016973	GO-bp	Annotation by Michelle Graham. GO Biological Process: poly(A)+ mRNA export from nucleus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005635	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nuclear envelope	SoyBase	N/A	ISS
GO:0005643	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nuclear pore	SoyBase	N/A	ISS
GO:0034399	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nuclear periphery	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
UniRef100_Q9LPN4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F18K10.27 protein n=1 Tax=Arabidopsis thaliana RepID=Q9LPN4_ARATH	SoyBase	E_val: 2.00E-87	ISS
UniRef100_UPI000233D657	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233D657 related cluster n=1 Tax=unknown RepID=UPI000233D657	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g33880

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g33880

Paralog	Evidence	Comments
Glyma20g33720	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g33880 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g194700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g33880

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g33880

Limit To All Plant Sequences

>Glyma10g33880.2   sequence type=CDS   gene model=Glyma10g33880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGACGGAAGAGAAAGAGAAGGGATACGAAGGGGGAGCAGGAGGGAAGTTTCGGAAACGCCCCTTCCGCAGCAGGATCCAAACGACGCCGTACGATCGGCCCCCAACGTCCCTCAGAAACCCTAGCAGGAAGAACAACAATGGTTGGTTGTCGAAGCTGGTGGATCCCGCTCAGAGGCTCATCACTTACAGCGCTCACTCTCTCTTCTCCTCGCTTTTCCGCAAGCGCCTTCCTCCACCACCTTCTTCAGAGACGGAACAGGAAGCGAGGAACAATCATCTGGAAGATGCCGTCTTTGTTACAAACAACAATTCCTCTGGCACACAGCAAGGACCTGTTGGCGGAAGTGATGCTCAAATTAATTGTTCTGACAGGGGTGGATTAACTGAACTTGAGAAACTATTAAAGCAGAAGACTTTCACCAGATCTGAGATTGATCATTTGACAGCACTTATGCGTTCAAGAACTGTCAATGCACCTGTCAAGGAAGAAGTAAAGGGGACAGAAATGGTTCCCTCAGAACCAATGTTGCTGAGTGGAATAAAGGAATATCCCAAAACACCTGCACTAGAAAATGGAACTAAAAATGGTCTTGTTGTAACCCCACATGCTTCAAGTTTTCCTGTTGAGGATGTTGCTTCACCTGCGGAGCTTGCAAAGTCTTACATGGGGAGCAGGCCTTCCAAGGTATCCTCTTCAATTTTAGGCATGCAAACTCTTGCACTCAGGGAGGATCCAACTCTTGTAAACAGTGAAAACGTTCCTCTGAAATCCCCTATTATGTCCATTGTGCCAAGGGCTACTAGACATGCTGCAGTTCATGAAAATGGTTTTGTGACCTCAAGATCTCGTGGCAGATCTGCAATATATAATATGGCTCGAACACCATATGCCAGAATTTATCCAACATCCACTCTCAAGGGTGGGGGGTGTGCTGTTGAAGGTGAGCCATCATCTTCAAGTCAGTTTGCATTGAATCATGACGTGCGTTCAGGATCTAAACTAGGGTCTGTAAAACGTAGAAGTTCAGTATTGGATAATGATATAGGATCTGGTGGTCCTTTTCGGCAAATTCGTCAGAAGTCTAATATTCTATATTCTAAAGGCTCATGCTCACCTATTTCTGGTAGCTCTTCATCTGTTGCTAGGAGCGGAATGGTTATGGATGCTGCTCTGCAACCCTTGTCTTCCATGCAGAAGTCTGCAAAAGAAAATGTGGATGGCATTATACCTAGTTCGAGCTTACCCTCTTTACCCTCAAAATCCAGTGAAGTGGCCTCAAAAATACTACATCAACTTGATAAGTTGGTTTCTCCAAAAGAAAAATCATCTGAATTAAGGCTACCAATTGTGAATGGTAATTCACCAACAAAGTTGTCGCCTTCCATGTTACGTGGACAGGCACTTAGAAGCATGGAAATGGTAGATTCGTCAAAATTGCTAGACGGTGTACATGGTAATAAATTAGATGGCCCATTTGGAAATTTTTCAGCTAGTGCTCAAAATCAGAAGTCAAATTCTCAGAGAGATAAAGTTGAAAATGGTCCATTGAAGCTTGTTGCTCCTTCCACTGGATTAATTCCACTTGTAACAGCTGTGGATGCTACACACCCAAGGAATCAAGTCTTGTATAGTGCAAAATCTGGGGATTCTTTTGTGATAAAATCTGTTTCTGACCCTCCACCAAAGAAGAGGGCATTCCATATGAGTGCACATGAGGATTGTCTGGATCTGGATGATGATGCTTATCTAAATAGAGCTGTCTCTTCTTTTTCTCCTGTTGAGAAAGAAATGACAAGCTCCACTGCTGTGATGGGGAAAACTACTTCTGGTATTGAAGCAATTGCACTGGAGAATCCATCGGCATTATCTGTAATAATGCCACCTAAAAGTTCTATAGTAGATGGTGAGGCTCATGTTGGGACTGCCGATGAGTCTAGGGTTGGTGAGAAAGTTGATGCATCTACCTCTATGACATCATCTATCCTTGATCCAACCTTCAAGCCATTTACAGCAGCTACACAAACAAGTTTTGGTTTTGACAAGCCTGCTTCACCAAATGGATCAATTGTTAAACCTTCCTTTACTTTTGGGGATAAAGTGATTTCGTTGACAGAGTTTATGGCTCCTGGTGCTCCATCAAAGGACATAACCAAATCTGGTCCAATATTTGGATTGGAAAAAGTTGTTTCATCAAAGGAGCCTGTTGCTGATGCTCCATTGGTGGACTTTGGCTCCAACAAAAATGTTAACAAGGTTCCATCAACGCCATTTACTGCTGCATCATCAGTTGTTGGTGAATCCCCTTTTCTGAAATTTGGTGCTTCTTTTGACTCAAAGCTGGGAAGTTCAATTAGCTCTACTACTGTTGCTGGTGTGACTGGTTCTATGCCAAAAGTTCGTGAATCTGATAATGGCAATACTGAAACTAATAAAGATACTGGATCTTCTGTTAGGGCATCAGAACTAGCTATTACATCTGCTGCATCAACATTGTTGACATCATCCAAGAGTATATTCAATTTTGGCCACAATTCGAATCAAAATAACGGGTCTCTTCTTTCAAGCACTTCATTTTCTTCTTTTCCACCTCCTGTATCAAATAATTTTACCAGTCAGAATATATCTAGTTCATCATCTGCTGCCACAAGCAGTGGCATTAGTGCCACTGGAAATTCTACTAGCATGGCAACTATCTCACCTGCCACAATTGCATCTAGTAATAGTTGTTTCTCTACCCCAGTGGTGGCATCCTCATCGTCAGCAATTTCCTTTTTTAAATTTGGATCCTCTCCTGTCCAATCAGCAGGTTTACCTGTGTCATCTTCTGGTTCAGAACCACCAGAAACTAAAAGCAGACAGGATGCAGGAATCAGTGGTCTTAGCAGCACTGCATTTGGGGCTAGCAGTGGTATTTTTGGCTTCAGGTCTTCAGCAATGACAACTGTAAATAGCCAGTCTCAGAGTTCTGCCTTTGGTGCTAGCAGTGGTTCTGTGCTTGGTGCCCAGACTTCATTTACCAGTGGGTTTGCAACTTCTACTCAGACCCAGTCAGTCTCATTTGGTTCATCTGCATCATCCTCATCATTTGGGTTGACCGGGAACCCACCTTTTTCTTCGAGCAGGTCTTCATTTCCTTCGTCCAGCCCTACAGCAAGTGCAGCTTTTCCTTCTGGGAGTTCGATGTTTCCTTCTTCGAGTCCTGCCACAAATGTTTTCAATTCTGGCACATCTTTTGGACTTGACACGTCTGCTTCCTCTTCAGCTGTCAACTCTGTGAGCTCCAATAGTGGCCCAAGTTCTACTTTATTTGGATCTAGTTGGCAGCCCAGCAAGTCTCCATTTGGTTCTACATTTACTTCATCATCGTCATCTGGGTTTTCCTTCGGAGGAACATCCACTGTTTCTGTTACTTCTGCCAGTTCACCCTCGATGTTTTTATCAACCTCCAGTGCATCAACTCCTCAATTCTCATTCACTCCGGCAGCAGCCTCTACCTCCACGCAGCCTGCTTTTGGAAGTCCTAATCCTGCCTTCGCATTCGGTTCAGCTCCTGTTAATAATGGTGAGATGAGTATGGAGGACAGTATGGCTGAGGATACAGGTCTAGCAACTCCACCTGCGACTGCTGTATACAGTCAGCAACCTGCCCCAGTTCAATCAAATTTTTTATTTGGAGCATCGACTCCATCAGGAGGCAGTCCTTTCCAGTTTGGTAGTCAACAGAATATTGCTCCACTGAACCCTTCTCCTTTTCAGGCTTCTGGCAGTCTAGGAGGGAGTTTCTCATTGGGCACAGGTGGAGGTGACAAATCTGCTAGAAGAATTGTGAAAGTTAAACATAAACCCCGCAAGAAGTAG

Predicted protein sequences of Glyma10g33880

Limit To All Plant Sequences

>Glyma10g33880.2   sequence type=predicted peptide   gene model=Glyma10g33880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATEEKEKGYEGGAGGKFRKRPFRSRIQTTPYDRPPTSLRNPSRKNNNGWLSKLVDPAQRLITYSAHSLFSSLFRKRLPPPPSSETEQEARNNHLEDAVFVTNNNSSGTQQGPVGGSDAQINCSDRGGLTELEKLLKQKTFTRSEIDHLTALMRSRTVNAPVKEEVKGTEMVPSEPMLLSGIKEYPKTPALENGTKNGLVVTPHASSFPVEDVASPAELAKSYMGSRPSKVSSSILGMQTLALREDPTLVNSENVPLKSPIMSIVPRATRHAAVHENGFVTSRSRGRSAIYNMARTPYARIYPTSTLKGGGCAVEGEPSSSSQFALNHDVRSGSKLGSVKRRSSVLDNDIGSGGPFRQIRQKSNILYSKGSCSPISGSSSSVARSGMVMDAALQPLSSMQKSAKENVDGIIPSSSLPSLPSKSSEVASKILHQLDKLVSPKEKSSELRLPIVNGNSPTKLSPSMLRGQALRSMEMVDSSKLLDGVHGNKLDGPFGNFSASAQNQKSNSQRDKVENGPLKLVAPSTGLIPLVTAVDATHPRNQVLYSAKSGDSFVIKSVSDPPPKKRAFHMSAHEDCLDLDDDAYLNRAVSSFSPVEKEMTSSTAVMGKTTSGIEAIALENPSALSVIMPPKSSIVDGEAHVGTADESRVGEKVDASTSMTSSILDPTFKPFTAATQTSFGFDKPASPNGSIVKPSFTFGDKVISLTEFMAPGAPSKDITKSGPIFGLEKVVSSKEPVADAPLVDFGSNKNVNKVPSTPFTAASSVVGESPFLKFGASFDSKLGSSISSTTVAGVTGSMPKVRESDNGNTETNKDTGSSVRASELAITSAASTLLTSSKSIFNFGHNSNQNNGSLLSSTSFSSFPPPVSNNFTSQNISSSSSAATSSGISATGNSTSMATISPATIASSNSCFSTPVVASSSSAISFFKFGSSPVQSAGLPVSSSGSEPPETKSRQDAGISGLSSTAFGASSGIFGFRSSAMTTVNSQSQSSAFGASSGSVLGAQTSFTSGFATSTQTQSVSFGSSASSSSFGLTGNPPFSSSRSSFPSSSPTASAAFPSGSSMFPSSSPATNVFNSGTSFGLDTSASSSAVNSVSSNSGPSSTLFGSSWQPSKSPFGSTFTSSSSSGFSFGGTSTVSVTSASSPSMFLSTSSASTPQFSFTPAAASTSTQPAFGSPNPAFAFGSAPVNNGEMSMEDSMAEDTGLATPPATAVYSQQPAPVQSNFLFGASTPSGGSPFQFGSQQNIAPLNPSPFQASGSLGGSFSLGTGGGDKSARRIVKVKHKPRKK*

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