Glyma10g33870 - SoyBase

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Report for Sequence Feature Glyma10g33870

Feature Type:	gene_model
Chromosome:	Gm10
Start:	42101990
stop:	42104852
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g33870

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G14140	AT	Annotation by Michelle Graham. TAIR10: Mitochondrial substrate carrier family protein \| chr1:4838131-4839602 REVERSE LENGTH=305	SoyBase	E_val: 4.00E-153	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0006839	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitochondrial transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005743	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial inner membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
KOG0753	KOG	Mitochondrial fatty acid anion carrier protein/Uncoupling protein	JGI		ISS
PTHR24089	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24089:SF25	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00153	PFAM	Mitochondrial carrier protein	JGI		ISS
UniRef100_G7ZYE6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial uncoupling protein n=1 Tax=Medicago truncatula RepID=G7ZYE6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LCJ5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LCJ5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g33870

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g33870

Paralog	Evidence	Comments
Glyma20g33730	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g33870 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g194600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g33870

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g33870

Limit To All Plant Sequences

>Glyma10g33870.4   sequence type=transcript   gene model=Glyma10g33870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTATTCCAATTACTTATGAATTTTCTCGGTGCGGATAGAACAGGTTCGGATAAACTGAACCGTGTCAGTGTGTCATCATCGACTGCTCCAAATGGCCGAGGAATCATTGCAGCCAAAAGACATCATACCAGTTCCTGGTTTCCTTGATTGTCTTAGAAGAACAAACAGCCTTGCATATCTTTTGGTGGTGAGTTAGGTCTTTCTTGAATGTACCCATGAAATCAGGCTATCAACACGGTGGAGTTGATATTACTCACACTAAGGCCTTTCTAACATCACTGTCAGCTATGGTGGCTGAGACCACAACTTTCCCCATAGATTTGATCAAGACCAGGCTCCAACTCCATGGCGAGTCACTTTCCTCGAGTCACCCCACTAGTGCATTTCGAGTAGGCTTGGGCATTATTCGTGAACAAGGTGCCCTTGGCCTTTACAGTGGCCTGTCACCAGCAATTATTAGACACATGTTCTACTCGCCTATTCGAATTGTTGGGTATGAGAACCTGAGAAATGTTGTTTCTGTTGATAATGCTTCGTTCTCTATCGTTGGCAAGGCTGTAGTTGGTGGAATCTCTGGTGTCTTGGCTCAGGTTATAGCCAGCCCAGCTGATCTTGTCAAGGTGAGGATGCAAGCTGATGGCCAAAGGGTGAGCCAAGGTCTTCAACCCCGGTATTCGGGGCCATTTGATGCTCTAAACAAAATTGTTCGTGCTGAAGGATTTCAAGGATTGTGGAAGGGTGTTTTTCCTAATATCCAAAGAGCCTTCTTAGTGAACATGGGAGAATTAGCCTGTTATGATCATGCTAAACAATTTGTTATTAGAAGTAGGATAGCTGATGACAATGTTTTTGCCCACACTTTTGCTTCCATCATGTCAGGTTTAGCGGCAACGTCTTTGAGCTGCCCGGCTGATGTTGTGAAGACTAGAATGATGAATCAGGCAGCTAAAAAGGAAGGGAAAGTCTTATATAATAGCTCTTATGATTGCTTGGTGAAGACAATTAAAGTTGAAGGAATAAGAGCATTGTGGAAAGGATTCTTCCCCACATGGGCAAGGCTTGGCCCATGGCAATTTGTGTTCTGGGTTTCCTATGAGAAGTTCAGGAAATTTGCAGGGCTCTCTTCTTTCTAATATAACATTTTATTTATTTATTTATACTAGCACTCATTCATCCATAATAAATTCACAAGTCACAGCCTACAGGGTACTAACACCCAGATTTATATTTTTCTCAACTTTTAGCTCAGTGTATACTTTTTTGAGATAAACTACATTACTCTTTCCTAAGAAGATTATATTATACTACCTGTGTTTTACTGCAGATTATTTAATGTGAA

Coding sequences of Glyma10g33870

Limit To All Plant Sequences

>Glyma10g33870.3   sequence type=CDS   gene model=Glyma10g33870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAATCAGGCTATCAACACGGTGGAGTTGATATTACTCACACTAAGGCCTTTCTAACATCACTGTCAGCTATGGTGGCTGAGACCACAACTTTCCCCATAGATTTGATCAAGACCAGGCTCCAACTCCATGGCGAGTCACTTTCCTCGAGTCACCCCACTAGTGCATTTCGAGTAGGCTTGGGCATTATTCGTGAACAAGGTGCCCTTGGCCTTTACAGTGGCCTGTCACCAGCAATTATTAGACACATGTTCTACTCGCCTATTCGAATTGTTGGGTATGAGAACCTGAGAAATGTTGTTTCTGTTGATAATGCTTCGTTCTCTATCGTTGGCAAGGCTGTAGTTGGTGGAATCTCTGGTGTCTTGGCTCAGGTTATAGCCAGCCCAGCTGATCTTGTCAAGGTGAGGATGCAAGCTGATGGCCAAAGGGTGAGCCAAGGTCTTCAACCCCGGTATTCGGGGCCATTTGATGCTCTAAACAAAATTGTTCGTGCTGAAGGATTTCAAGGATTGTGGAAGGGTGTTTTTCCTAATATCCAAAGAGCCTTCTTAGTGAACATGGGAGAATTAGCCTGTTATGATCATGCTAAACAATTTGTTATTAGAAGTAGGATAGCTGATGACAATGTTTTTGCCCACACTTTTGCTTCCATCATGTCAGGTTTAGCGGCAACGTCTTTGAGCTGCCCGGCTGATGTTGTGAAGACTAGAATGATGAATCAGGCAGCTAAAAAGGAAGGGAAAGTCTTATATAATAGCTCTTATGATTGCTTGGTGAAGACAATTAAAGTTGAAGGAATAAGAGCATTGTGGAAAGGATTCTTCCCCACATGGGCAAGGCTTGGCCCATGGCAATTTGTGTTCTGGGTTTCCTATGAGAAGTTCAGGAAATTTGCAGGGCTCTCTTCTTTCTAA

>Glyma10g33870.4   sequence type=CDS   gene model=Glyma10g33870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAATCAGGCTATCAACACGGTGGAGTTGATATTACTCACACTAAGGCCTTTCTAACATCACTGTCAGCTATGGTGGCTGAGACCACAACTTTCCCCATAGATTTGATCAAGACCAGGCTCCAACTCCATGGCGAGTCACTTTCCTCGAGTCACCCCACTAGTGCATTTCGAGTAGGCTTGGGCATTATTCGTGAACAAGGTGCCCTTGGCCTTTACAGTGGCCTGTCACCAGCAATTATTAGACACATGTTCTACTCGCCTATTCGAATTGTTGGGTATGAGAACCTGAGAAATGTTGTTTCTGTTGATAATGCTTCGTTCTCTATCGTTGGCAAGGCTGTAGTTGGTGGAATCTCTGGTGTCTTGGCTCAGGTTATAGCCAGCCCAGCTGATCTTGTCAAGGTGAGGATGCAAGCTGATGGCCAAAGGGTGAGCCAAGGTCTTCAACCCCGGTATTCGGGGCCATTTGATGCTCTAAACAAAATTGTTCGTGCTGAAGGATTTCAAGGATTGTGGAAGGGTGTTTTTCCTAATATCCAAAGAGCCTTCTTAGTGAACATGGGAGAATTAGCCTGTTATGATCATGCTAAACAATTTGTTATTAGAAGTAGGATAGCTGATGACAATGTTTTTGCCCACACTTTTGCTTCCATCATGTCAGGTTTAGCGGCAACGTCTTTGAGCTGCCCGGCTGATGTTGTGAAGACTAGAATGATGAATCAGGCAGCTAAAAAGGAAGGGAAAGTCTTATATAATAGCTCTTATGATTGCTTGGTGAAGACAATTAAAGTTGAAGGAATAAGAGCATTGTGGAAAGGATTCTTCCCCACATGGGCAAGGCTTGGCCCATGGCAATTTGTGTTCTGGGTTTCCTATGAGAAGTTCAGGAAATTTGCAGGGCTCTCTTCTTTCTAA

Predicted protein sequences of Glyma10g33870

Limit To All Plant Sequences

>Glyma10g33870.3   sequence type=predicted peptide   gene model=Glyma10g33870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKSGYQHGGVDITHTKAFLTSLSAMVAETTTFPIDLIKTRLQLHGESLSSSHPTSAFRVGLGIIREQGALGLYSGLSPAIIRHMFYSPIRIVGYENLRNVVSVDNASFSIVGKAVVGGISGVLAQVIASPADLVKVRMQADGQRVSQGLQPRYSGPFDALNKIVRAEGFQGLWKGVFPNIQRAFLVNMGELACYDHAKQFVIRSRIADDNVFAHTFASIMSGLAATSLSCPADVVKTRMMNQAAKKEGKVLYNSSYDCLVKTIKVEGIRALWKGFFPTWARLGPWQFVFWVSYEKFRKFAGLSSF*

>Glyma10g33870.4   sequence type=predicted peptide   gene model=Glyma10g33870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKSGYQHGGVDITHTKAFLTSLSAMVAETTTFPIDLIKTRLQLHGESLSSSHPTSAFRVGLGIIREQGALGLYSGLSPAIIRHMFYSPIRIVGYENLRNVVSVDNASFSIVGKAVVGGISGVLAQVIASPADLVKVRMQADGQRVSQGLQPRYSGPFDALNKIVRAEGFQGLWKGVFPNIQRAFLVNMGELACYDHAKQFVIRSRIADDNVFAHTFASIMSGLAATSLSCPADVVKTRMMNQAAKKEGKVLYNSSYDCLVKTIKVEGIRALWKGFFPTWARLGPWQFVFWVSYEKFRKFAGLSSF*

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