SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G51100 | AT | Annotation by Michelle Graham. TAIR10: Fe superoxide dismutase 2 | chr5:20773357-20775635 REVERSE LENGTH=305 | SoyBase | E_val: 6.00E-118 | ISS |
| GO:0006364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: rRNA processing | SoyBase | N/A | ISS |
| GO:0006399 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tRNA metabolic process | SoyBase | N/A | ISS |
| GO:0009411 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to UV | SoyBase | N/A | ISS |
| GO:0009658 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast organization | SoyBase | N/A | ISS |
| GO:0042793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription from plastid promoter | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0009295 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleoid | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009579 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: thylakoid | SoyBase | N/A | ISS |
| GO:0042644 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast nucleoid | SoyBase | N/A | ISS |
| GO:0004784 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: superoxide dismutase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG0876 | KOG | Manganese superoxide dismutase | JGI | ISS | |
| PTHR11404 | Panther | SUPEROXIDE DISMUTASE 2 | JGI | ISS | |
| PTHR11404:SF8 | Panther | IRON/MANGANESE SUPEROXIDE DISMUTASE | JGI | ISS | |
| PF00081 | PFAM | Iron/manganese superoxide dismutases, alpha-hairpin domain | JGI | ISS | |
| PF02777 | PFAM | Iron/manganese superoxide dismutases, C-terminal domain | JGI | ISS | |
| UniRef100_I1LCI3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Superoxide dismutase n=1 Tax=Glycine max RepID=I1LCI3_SOYBN | SoyBase | E_val: 9.00E-179 | ISS |
| UniRef100_I1LCI3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Superoxide dismutase n=1 Tax=Glycine max RepID=I1LCI3_SOYBN | SoyBase | E_val: 9.00E-179 | ISS |
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Glyma10g33710 not represented in the dataset |
Glyma10g33710 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g33880 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g193500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g33710.2 sequence type=transcript gene model=Glyma10g33710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AATTGTACTAACACACTTTCTTGTTTATATTGCCCTGTAAGGAATGGGTAGACCTTTGTCCAAAATCCTCACTCCAGCCACACGCCTCAGTAGACCATGGCCTCATTGGGTGGGTTACAAAATCTAAGCGGCATCAATTTTCTTATCAAAAAAGAGGGTCCAAAAGTCAATGCGAAGTTCGAGCTGAAGCCGCCACCATATCCACTGAATGGTTTGGAGCCGGTGATGAGCCAGCAGACACTTGAGTTTCATTGGGGGAAACACCACAAGACATATGTGGAAAATCTGAAAAAACAAATTGTTGGGACAGAGCTTGATGGGAAATCACTAGAAGAGATTATAGTGACATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAGGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGAAAGCCATCCGGGGAGCTTCTAGAACTGATTGAAAGAGACTTTGGCTCATTTGAAAAATTCCTTGATGAGTTTAAGGCTGCTGCTGCAACACAATTTGGTTCAGGATGGGCTTGGCTTGCATATAGAGCAAGCAAATTTGATGGGGAAAATGCAGCAAATCCTCCTTCACCAGATGAGGACAACAAGCTAGTGGTGCTCAAGAGTCCCAATGCTGTGAACCCCCTTGTTTGGGGAGGCTATTATGTAAGTAGTAATAATATTATTGTTCCTTACTTATCTTGAAATATGAATGATAGTTGGGTCTAATGAGTTCATTTCCCTGGTAAATTCTGATGTGATTTTATCTTAATTTCTTGCAGCCACTTCTTACCATTGATGTTTGGGAGGTATTAATCATATTTGCCTTTTGTTTGTTATTTGATGAAACAATTTGCACATACAAGCTTTATAACAGTCATTAATAACAACTTGCTGACTTTGTAATACTTGTTTTCATTTTTGTACAGCATGCTTACTACCTTGATTTTCAGAACCGGCGCCCTGATTATATATCAGTGTTCATGGATAAGCTTGTTTCCTGGGATGCAGTGAGTTCTAGACTTGAACAAGCAAGGCTTTAATTAACCAGTGCATGATGCTGAATTAAATGCAGAATAAGTGATTTATCCTGATAGTGATGATGAATTGGATGGCGTCATGAGGAATAGTGGATTATTTTTATCTAGAAAGTGTACGATGGCACATCTTTTGTACTTTAAATAGGTGTTGTGGTATCAGGCTAAATCACTTCAGCCTGCAGATTATGTTCTATAATTAGAAATCTTAGTTATGGTTCTCTTTGTGTGACTGTGTGAACAATAAAATTGCTTATGCATGAACATTCAGCAAAATAATACTATGTTGTAGAACCTTTTCACGTAACTTGTACGAGAGCGTATCTTTTTTTCCATG
>Glyma10g33710.1 sequence type=CDS gene model=Glyma10g33710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCTCATTGGGTGGGTTACAAAATCTAAGCGGCATCAATTTTCTTATCAAAAAAGAGGGTCCAAAAGTCAATGCGAAGTTCGAGCTGAAGCCGCCACCATATCCACTGAATGGTTTGGAGCCGGTGATGAGCCAGCAGACACTTGAGTTTCATTGGGGGAAACACCACAAGACATATGTGGAAAATCTGAAAAAACAAATTGTTGGGACAGAGCTTGATGGGAAATCACTAGAAGAGATTATAGTGACATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAGGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGAAAGCCATCCGGGGAGCTTCTAGAACTGATTGAAAGAGACTTTGGCTCATTTGAAAAATTCCTTGATGAGTTTAAGGCTGCTGCTGCAACACAATTTGGTTCAGGATGGGCTTGGCTTGCATATAGAGCAAGCAAATTTGATGGGGAAAATGCAGCAAATCCTCCTTCACCAGATGAGGACAACAAGCTAGTGGTGCTCAAGAGTCCCAATGCTGTGAACCCCCTTGTTTGGGGAGGCTATTATCCACTTCTTACCATTGATGTTTGGGAGCATGCTTACTACCTTGATTTTCAGAACCGGCGCCCTGATTATATATCAGTGTTCATGGATAAGCTTGTTTCCTGGGATGCAGTGAGTTCTAGACTTGAACAAGCAAGGCTTTAA >Glyma10g33710.2 sequence type=CDS gene model=Glyma10g33710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCTCATTGGGTGGGTTACAAAATCTAAGCGGCATCAATTTTCTTATCAAAAAAGAGGGTCCAAAAGTCAATGCGAAGTTCGAGCTGAAGCCGCCACCATATCCACTGAATGGTTTGGAGCCGGTGATGAGCCAGCAGACACTTGAGTTTCATTGGGGGAAACACCACAAGACATATGTGGAAAATCTGAAAAAACAAATTGTTGGGACAGAGCTTGATGGGAAATCACTAGAAGAGATTATAGTGACATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAGGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGAAAGCCATCCGGGGAGCTTCTAGAACTGATTGAAAGAGACTTTGGCTCATTTGAAAAATTCCTTGATGAGTTTAAGGCTGCTGCTGCAACACAATTTGGTTCAGGATGGGCTTGGCTTGCATATAGAGCAAGCAAATTTGATGGGGAAAATGCAGCAAATCCTCCTTCACCAGATGAGGACAACAAGCTAGTGGTGCTCAAGAGTCCCAATGCTGTGAACCCCCTTGTTTGGGGAGGCTATTATGTAAGTAGTAATAATATTATTGTTCCTTACTTATCTTGA
>Glyma10g33710.1 sequence type=predicted peptide gene model=Glyma10g33710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASLGGLQNLSGINFLIKKEGPKVNAKFELKPPPYPLNGLEPVMSQQTLEFHWGKHHKTYVENLKKQIVGTELDGKSLEEIIVTSYNKGDILPAFNNAAQVWNHDFFWECMKPGGGGKPSGELLELIERDFGSFEKFLDEFKAAAATQFGSGWAWLAYRASKFDGENAANPPSPDEDNKLVVLKSPNAVNPLVWGGYYPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWDAVSSRLEQARL* >Glyma10g33710.2 sequence type=predicted peptide gene model=Glyma10g33710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASLGGLQNLSGINFLIKKEGPKVNAKFELKPPPYPLNGLEPVMSQQTLEFHWGKHHKTYVENLKKQIVGTELDGKSLEEIIVTSYNKGDILPAFNNAAQVWNHDFFWECMKPGGGGKPSGELLELIERDFGSFEKFLDEFKAAAATQFGSGWAWLAYRASKFDGENAANPPSPDEDNKLVVLKSPNAVNPLVWGGYYVSSNNIIVPYLS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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