Glyma10g33640 - SoyBase

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Report for Sequence Feature Glyma10g33640

Feature Type:	gene_model
Chromosome:	Gm10
Start:	41947157
stop:	41953598
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g33640

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G04650	AT	Annotation by Michelle Graham. TAIR10: unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr1:1294893-1298903 REVERSE LENGTH=997	SoyBase	E_val: 0	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
UniRef100_O23019	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: T1G11.9 protein n=1 Tax=Arabidopsis thaliana RepID=O23019_ARATH	SoyBase	E_val: 0	ISS
UniRef100_UPI000233D650	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233D650 related cluster n=1 Tax=unknown RepID=UPI000233D650	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g33640

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g33640

Paralog	Evidence	Comments
Glyma20g33960	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g33640 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g192800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g33640

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g33640

Limit To All Plant Sequences

>Glyma10g33640.1   sequence type=CDS   gene model=Glyma10g33640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTCCGTCATTAACTGCCTCTTTGATCTTTTGGGAGAACTTCACATGTTTGGATGTGACCCAGTGCATGCTAAATAGAAGCATTATACAAGTGGCTTTGAGCTATATGGATTTTAACCCATCCAGTTGCTTACCACAATTTCTCACTCTTGGAGTCAGGGCCTGTGTCTGGTGTGACAAGCATCTAAAGATGAGTCTTTTGTCATCCGAAGATTCTCAGGAAGATGAACATAGCTCTGTATTTTACCAGCTTCTTGTGGAGATCCTAAGGTTTTCTGCATCAACATTTTCAACTTTGTTGAAATTCACTGATTTTGGTGACAAGGAATTGATGGACACTGTTGAAATCTTCATTTTAGAAGCATTAAATCTGACTAAAGATTCTATATCAGAGGCTAAGAAAATTCAATCATTTGGATCAGAAATATTGAAGGTTGCACACGTGGTCATTGATGCCGTGGTAAAATTATGCAAGGTGCGTTCTGAATTAATAAACCAGGAGGTAGGTGATGAAAAATGGTTGAGGCTTGACAAGCCTGCTATTGTTGACCATGTTATCAACATAACAAAATGTGCAATAGAAAAGCTGTCTCAGATTGGTGTCCTTGCTGCAAATGATGGTGGCAACTCAGTCAATATTCTTAATGTCTCCTGGAAAGGAATTGTTTCTTTGCTTCAAATTGGTGGTGGGCATTTTACAGAAGTTGACGTAGCAAATATAGTGTTAACATTGCTTGCATTGATAACGGAGCCTTTGAAATGTGCTGCCCAGGCTTGGTCTTCCTCACTGAATGAAGCCATTTCTGTAACTGAAGCTAAAAGGATCTTTGTGCCTGTGAAATTTTACCTAATTAATGCTGTTAAAATATGCTCACTGTATCCTCATCAGGCCTATACAGTGTACAAGGAAATTACAGAGTGTGTTCTCAAGATCACATGTTTTTGGATTTTTGTAAGTAATGAAAACCTTCTGAAATGTGCATCTGTGGTAATTACCGAACTACTGGAGGAAACAACATTGAATTTGCTTTTGTCTTTGCTAAATTCTTATAAACTGAAACTGGAACAGAAGCTTGAGGTGCTAGAATGGTTGTTCACTAATAAAGGGGATTCTCATTCTGGCCTTGATTGTCCAACCTTAAGTGATTGTAACCTTGCATGGGTTAATGATATCTTTTGCAATAGTTATGAAAGTATGAGCAGAGCAAAAATACTAATACTTGGTCGAGTTGTATTGTTTATTAACTTCTTCAGATATTCTCTTGGGCTCGATGGAGATATGAAAATAGCAATAACTCAGAAGCTTTATTGGTTTTTGGATGTTTTAGTTGAGGAAGATGTCTATTCTCATATACTTGTTTTGCAATTTCCTTTATTGTATGGATCTGGAAAAACAGCAGAACTGGTGAGGCAACCTATGTTTACTTCCCTCTTGCAAGCATTCAAAACCTTCATGATTGTGATCTGTTCAAGTACAGCTTGGGAGGAGTTGGAGTCTTTCTTACTAGAGAATTTCTTTCATCCTCACTTTCTATGCTGGGAGATTGTGATGGAATGCTGGTGCTTTATGCTGCGATATGCTGAAACACAAATGGCAAACAACATCCTTAGCAAACTATGTTCATTACTTAAGCTGTTGGCATCCTCATACTCAGTTTTTGTGCCTTATTCTTCCTTCAGAAAGTTGGCAAGATCAATATGCATGCTTTTAACCAATGGTGCACAATCAATGGTTAACGAGGTGTACATGTCTCTTGTTGGTGATGGGAAATCACAGTTGTCATCAATTTTTTGTTTGGCTTTGTTCATGGAAGGTTTTCCTTTTGATTTACTGACAGATGAATTGAGAAAGACTTCCATTCAAAGAATTATATCTGATTATTTTGACTTCATAGACAACTTTGATGAAGCGTCATTGGTGGCATGCTCCTCTGGCTTGTTTGGTGTTCCAGTTTTTATTCTTTCTGCTTCTTTGCAATCACTCCAGGATGGACTATCTCATATTGATGAAAGGGCCCGGAAGTTTTTGGTTGCAATTTCTTCTAATTACAAAAGTACTGTAGACAAAGTAATCAAGGACCGTTATCTTCAGCTTTTCAGTGAAACTCTAGGGATCATCTCATATTTTAAAAAACTGTATACCTCAAATGATATTGAACAAGTCATCATGGAGATTCAAAATATCTTTTTGTCTGAGCCTCCAGCCCTTTTGGACAAATGCAAACCACATTTGGCCCAATTCCTTGCAGGACTTGTTCACATGGAAATTTCAGAAAGTGATGATGATGCAAAGAGCTGTGCTGTGTGGGAATTATATCACTTGCTCCTGAAAGAGCGGCACTGGGCACTCAGTCACTTGGCAATAACTGCATTTGGATATTTTGCTTCTCGTACTAGGTGCAATAAGCTATGGAGATTTGTTCCAGAAGATGCAGCGCTTTCATATGATATAGTTTCAGGAGTGGAGTCAGATCAGCAAAGATTTATGGTTGAGTTTGGAAAATTTCTTAAAAAGGAGATAGCTCTTCTTACACTTGCACCAATCCCTGAACAGCTTGAGCTGCTTGGGAGAGAAGGTTTTGTGTTGAAACAGATGGTCCAAAAGATTTCAGCAATTGCTGAAGAGAGAGAGAAATGTGAGGTCATGGAAGTTGATCACAAGAGCCAATCACATAAAAAGAGGAAACTTCCTGATGGAATTAACAGAGGAGTGGAATTGCTGAAAAATGGTTTAAAAATTATTGGTGACGGTCTATCCCAGTGGCAGCTTAATGATTTTGATACCACTGAACTGCATGTAAAATATTTGACTCAGTTTTCTCAACTTGAAGACGTAATTACTCACTTTGAGGAATTGACCGGGAGCGGTGAGGTATGTTCATCTTCTATGCAGAGTAATTCTCGAGCTTGA

Predicted protein sequences of Glyma10g33640

Limit To All Plant Sequences

>Glyma10g33640.1   sequence type=predicted peptide   gene model=Glyma10g33640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVPSLTASLIFWENFTCLDVTQCMLNRSIIQVALSYMDFNPSSCLPQFLTLGVRACVWCDKHLKMSLLSSEDSQEDEHSSVFYQLLVEILRFSASTFSTLLKFTDFGDKELMDTVEIFILEALNLTKDSISEAKKIQSFGSEILKVAHVVIDAVVKLCKVRSELINQEVGDEKWLRLDKPAIVDHVINITKCAIEKLSQIGVLAANDGGNSVNILNVSWKGIVSLLQIGGGHFTEVDVANIVLTLLALITEPLKCAAQAWSSSLNEAISVTEAKRIFVPVKFYLINAVKICSLYPHQAYTVYKEITECVLKITCFWIFVSNENLLKCASVVITELLEETTLNLLLSLLNSYKLKLEQKLEVLEWLFTNKGDSHSGLDCPTLSDCNLAWVNDIFCNSYESMSRAKILILGRVVLFINFFRYSLGLDGDMKIAITQKLYWFLDVLVEEDVYSHILVLQFPLLYGSGKTAELVRQPMFTSLLQAFKTFMIVICSSTAWEELESFLLENFFHPHFLCWEIVMECWCFMLRYAETQMANNILSKLCSLLKLLASSYSVFVPYSSFRKLARSICMLLTNGAQSMVNEVYMSLVGDGKSQLSSIFCLALFMEGFPFDLLTDELRKTSIQRIISDYFDFIDNFDEASLVACSSGLFGVPVFILSASLQSLQDGLSHIDERARKFLVAISSNYKSTVDKVIKDRYLQLFSETLGIISYFKKLYTSNDIEQVIMEIQNIFLSEPPALLDKCKPHLAQFLAGLVHMEISESDDDAKSCAVWELYHLLLKERHWALSHLAITAFGYFASRTRCNKLWRFVPEDAALSYDIVSGVESDQQRFMVEFGKFLKKEIALLTLAPIPEQLELLGREGFVLKQMVQKISAIAEEREKCEVMEVDHKSQSHKKRKLPDGINRGVELLKNGLKIIGDGLSQWQLNDFDTTELHVKYLTQFSQLEDVITHFEELTGSGEVCSSSMQSNSRA*

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