Glyma10g33590 - SoyBase

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Report for Sequence Feature Glyma10g33590

Feature Type:	gene_model
Chromosome:	Gm10
Start:	41903349
stop:	41907832
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g33590

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G13670	AT	Annotation by Michelle Graham. TAIR10: plastid transcriptionally active 5 \| chr4:7948644-7950779 FORWARD LENGTH=387	SoyBase	E_val: 1.00E-125	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009295	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleoid	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009508	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid chromosome	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0031072	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding	SoyBase	N/A	ISS
GO:0051082	GO-mf	Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding	SoyBase	N/A	ISS
PF01471	PFAM	Putative peptidoglycan binding domain	JGI		ISS
UniRef100_B6SSP4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Peptidoglycan binding domain containing protein n=1 Tax=Zea mays RepID=B6SSP4_MAIZE	SoyBase	E_val: 3.00E-80	ISS
UniRef100_I1LCH0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LCH0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g33590

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g33590 not represented in the dataset	Glyma10g33590 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g33590

Paralog	Evidence	Comments
Glyma20g34000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g33590 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g192300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g33590

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g33590

Limit To All Plant Sequences

>Glyma10g33590.4   sequence type=transcript   gene model=Glyma10g33590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTGAAGTGGTAAATTGGCCGCGTGTTGCAATATGATAACTGAAACATCCATCCATGGCCTCCATCATCCAAATTTTACAATGTTATCAATTCTTCTCCCAGTGACAGCAACTCCCATTTCCACTCTCACCAAAACCCTCCCTCTCTCAAATCACTACTTACTCTCCTATAAATTCAAATTCAACTCCCTCGTCCGCCATTGCTCCCTCTCCGACCGCGAGGAGCAGCGCTGGCTCCGCGAGGAGCAGCGCTGGCTCCGCGACGAACGGCGCTGGCTCCGCGAGGAGCAGCGCTGGGCTCGCGAGCGCGACCAGCTCCTCCGCGAGATCGCCGACCTCAACCTCCAAATCCAGGCGCTTGAGCGTCGCCTCTCGATGCGCGATTTGTCCTCTCCGGCTTCCGTCTCCGACGCCGTCGCCAATGTCACGTTGCTCCTGAAGGTGCTGAAGGACAAGAATCTGGTTCTCGAGAGCGTTTCGAGTCTGCGGAACACGGAGGCAGAAGAGGAGGAGGAGAAGAAGCAATTCGAAGAGGTTGTCGAACACGTAAAGGAGGTTGTGATGGTTGAGGAATCTGCTAGGGTTGAAAAGAGGATCTCGTTGCGGATAGGTTCCGAAGGAGAAGAGGTTCGACAAATGCAGGAAGCATTGTTGAAATTGGGGTTTTACTCTGGCGAGGAAGACATGGAGTATTCCAGCTTCTCAAGTGGAACTGAGCGTGCTGTGAAGACTTGGCAAGCTGCACTAGGTGCCCCTGAGGATGGTATCATGACAGCTGAACTTCTTGAAAGGTTGTATTTGGAGATAAGGAATAAGGGCACAGGTAGTGCGACTCAAGACAAACAATCTACTACTGTTTTGCCAAAGGAAGTTGAAAATGGAGCTGCAGTTGCTTCAGTGGCAGAAAATTCAGAGGTTCAGCAAAAAGATGTGAAAAATGATAAGGAAACAGAAGTCTCCCACCGGGGAGTTTTTCTCCTTGGAGAGAATCGGTGGGAAGAACCATCAAGACTTGTTGCAAGGGATGGAGTTGATAAGAGCAAGAACAAGGATATGACAACAAAATGCCTTCAATGTCGTGGGGAAGGTCGCTTGATGTGTACAGAATGTGATGGATCTGGCGAGCCAAATATTGAACCTCAATTTATTGAATGGGTGGAAGAGGGTACAAAATGCCCATATTGTAAAGGCCTAGGGTATACTGTATGTGATCTATGTGGAGGGAAAACTATGGTATAGGGCTTTGGAGCTTACAGAGCTACGTGAAACTCTACTGAGAAACCTCACAAATTACAACATAGATTGAACGGTGCATGCAATTTTAAACCTTCAAAATGAATGAGGTGATATGCCATACTGAGTATATTCAAACATACATTTTCCCCTTGTCCGAACTACGTTTGTTTCAAACTTTATGATTTGTCAAATCACAAAGTTATGTAATGCTGTTAATTTGTAGATGCTTCACAGGCAGACACTGTCATCTTTGAATACTATTTGGCCATAAGCCAAAAATAATAGGTGGCCGAAGGGAATGACAAATCGAAGACTGCACAAAGGCTTTTATAGCAAGGGTTGCGGAAGTGTGAGCAGTTTCCAAAATCCTTCGAGTTAACTCGAAATAAAGGTGTGGTAGCATCGAGCTCAGTCAAATACTTGGCACTAGACCTATATCTTTAATGCTTATTTATTTGAGGGACTTGGAGATTAAGGAGCTTTAGATACACATGACAAAATGAGTAAAATATGAGATGGTCAGTGAATAAAAAATATGCGCCAACTAAAATGAGGTGGTTAGCAACGAATAACCACGAATTTTTAAGTGTCATTATAATTTTATTTTGCACATGCCGATCTAATTAACTTCTCACTCATTTAGAAAATGTTAACGTTCCCCATTCACCAAAGATCAAAATTTGCAGCTGACTTTCTTCTCTCTTTTTTTTTTGAATGGTC

>Glyma10g33590.5   sequence type=transcript   gene model=Glyma10g33590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTGAAGTGGTAAATTGGCCGCGTGTTGCAATATGATAACTGAAACATCCATCCATGGCCTCCATCATCCAAATTTTACAATGTTATCAATTCTTCTCCCAGTGACAGCAACTCCCATTTCCACTCTCACCAAAACCCTCCCTCTCTCAAATCACTACTTACTCTCCTATAAATTCAAATTCAACTCCCTCGTCCGCCATTGCTCCCTCTCCGACCGCGAGGAGCAGCGCTGGCTCCGCGAGGAGCAGCGCTGGCTCCGCGACGAACGGCGCTGGCTCCGCGAGGAGCAGCGCTGGGCTCGCGAGCGCGACCAGCTCCTCCGCGAGATCGCCGACCTCAACCTCCAAATCCAGGCGCTTGAGCGTCGCCTCTCGATGCGCGATTTGTCCTCTCCGGCTTCCGTCTCCGACGCCGTCGCCAATGTCACGTTGCTCCTGAAGGTGCTGAAGGACAAGAATCTGGTTCTCGAGAGCGTTTCGAGTCTGCGGAACACGGAGGCAGAAGAGGAGGAGGAGAAGAAGCAATTCGAAGAGGTTGTCGAACACGTAAAGGAGGTTGTGATGGTTGAGGAATCTGCTAGGGTTGAAAAGAGGATCTCGTTGCGGATAGGTTCCGAAGGAGAAGAGGTTCGACAAATGCAGGAAGCATTGTTGAAATTGGGGTTTTACTCTGGCGAGGAAGACATGGAGTATTCCAGCTTCTCAAGTGGAACTGAGCGTGCTGTGAAGACTTGGCAAGCTGCACTAGGTGCCCCTGAGGATGGTATCATGACAGCTGAACTTCTTGAAAGGTTGTATTTGGAGATAAGGAATAAGGGCACAGGTAGTGCGACTCAAGACAAACAATCTACTACTGTTTTGCCAAAGGAAGTTGAAAATGGAGCTGCAGTTGCTTCAGTGGCAGAAAATTCAGAGGTTCAGCAAAAAGATGTGAAAAATGATAAGGAAACAGAAGTCTCCCACCGGGGAGTTTTTCTCCTTGGAGAGAATCGGTGGGAAGAACCATCAAGACTTGTTGCAAGGGATGGAGTTGATAAGAGCAAGAACAAGGATATGACAACAAAATGCCTTCAATGTCGTGGGGAAGGTCGCTTGATGTGTACAGAATGTGATGGATCTGGCGAGCCAAATATTGAACCTCAATTTATTGAATGGGTGGAAGAGGGTACAAAATGCCCATATTGTAAAGGCCTAGGGTATACTGTATGTGATCTATGTGGAGGGAAAACTATGGTATAGGGCTTTGGAGCTTACAGAGCTACGTGAAACTCTACTGAGAAACCTCACAAATTACAACATAGATTGAACGGTGCATGCAATTTTAAACCTTCAAAATGAATGAGATGCTTCACAGGCAGACACTGTCATCTTTGAATACTATTTGGCCATAAGCCAAAAATAATAGGTGGCCGAAGGGAATGACAAATCGAAGACTGCACAAAGGCTTTTATAGCAAGGGTTGCGGAAGTGTGAGCAGTTTCCAAAATCCTTCGAGTTAACTCGAAATAAAGGTGTGGTAGCATCGAGCTCAGTCAAATACTTGGCACTAGACCTATATCTTTAATGCTTATTTATTTGAGGGACTTGGAGATTAAGGAGCTTTAGATACACATGACAAAATGAGTAAAATATGAGATGGTCAGTGAATAAAAAATATGCGCCAACTAAAATGAGGTGGTTAGCAACGAATAACCACGAATTTTTAAGTGTCATTATAATTTTATTTTGCACATGCCGATCTAATTAACTTCTCACTCATTTAGAAAATGTTAACGTTCCCCATTCACCAAAGATCAAAATTTGCAGCTGACTTTCTTCTCTCTTTTTTTTTTGAATGGTC

Coding sequences of Glyma10g33590

Limit To All Plant Sequences

>Glyma10g33590.3   sequence type=CDS   gene model=Glyma10g33590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAACTGAAACATCCATCCATGGCCTCCATCATCCAAATTTTACAATGTTATCAATTCTTCTCCCAGTGACAGCAACTCCCATTTCCACTCTCACCAAAACCCTCCCTCTCTCAAATCACTACTTACTCTCCTATAAATTCAAATTCAACTCCCTCGTCCGCCATTGCTCCCTCTCCGACCGCGAGGAGCAGCGCTGGCTCCGCGAGGAGCAGCGCTGGCTCCGCGACGAACGGCGCTGGCTCCGCGAGGAGCAGCGCTGGGCTCGCGAGCGCGACCAGCTCCTCCGCGAGATCGCCGACCTCAACCTCCAAATCCAGGCGCTTGAGCGTCGCCTCTCGATGCGCGATTTGTCCTCTCCGGCTTCCGTCTCCGACGCCGTCGCCAATGTCACGTTGCTCCTGAAGGTGCTGAAGGACAAGAATCTGGTTCTCGAGAGCGTTTCGAGTCTGCGGAACACGGAGGCAGAAGAGGAGGAGGAGAAGAAGCAATTCGAAGAGGTTGTCGAACACGTAAAGGAGGTTGTGATGGTTGAGGAATCTGCTAGGGTTGAAAAGAGGATCTCGTTGCGGATAGGTTCCGAAGGAGAAGAGGTTCGACAAATGCAGGAAGCATTGTTGAAATTGGGGTTTTACTCTGGCGAGGAAGACATGGAGTATTCCAGCTTCTCAAGTGGAACTGAGCGTGCTGTGAAGACTTGGCAAGCTGCACTAGGTGCCCCTGAGGATGGTATCATGACAGCTGAACTTCTTGAAAGGTTGTATTTGGAGATAAGGAATAAGGGCACAGGTAGTGCGACTCAAGACAAACAATCTACTACTGTTTTGCCAAAGGAAGTTGAAAATGGAGCTGCAGTTGCTTCAGTGGCAGAAAATTCAGAGGTTCAGCAAAAAGATGTGAAAAATGATAAGGAAACAGAAGTCTCCCACCGGGGAGTTTTTCTCCTTGGAGAGAATCGGTGGGAAGAACCATCAAGACTTGTTGCAAGGGATGGAGTTGATAAGAGCAAGAACAAGGATATGACAACAAAATGCCTTCAATGTCGTGGGGAAGGTCGCTTGATGTGTACAGAATGTGATGGATCTGGCGAGCCAAATATTGAACCTCAATTTATTGAATGGGTGGAAGAGGGTACAAAATGCCCATATTGTAAAGGCCTAGGGTATACTGTATGTGATCTATGTGGAGGGAAAACTATGGTATAG

>Glyma10g33590.4   sequence type=CDS   gene model=Glyma10g33590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAACTGAAACATCCATCCATGGCCTCCATCATCCAAATTTTACAATGTTATCAATTCTTCTCCCAGTGACAGCAACTCCCATTTCCACTCTCACCAAAACCCTCCCTCTCTCAAATCACTACTTACTCTCCTATAAATTCAAATTCAACTCCCTCGTCCGCCATTGCTCCCTCTCCGACCGCGAGGAGCAGCGCTGGCTCCGCGAGGAGCAGCGCTGGCTCCGCGACGAACGGCGCTGGCTCCGCGAGGAGCAGCGCTGGGCTCGCGAGCGCGACCAGCTCCTCCGCGAGATCGCCGACCTCAACCTCCAAATCCAGGCGCTTGAGCGTCGCCTCTCGATGCGCGATTTGTCCTCTCCGGCTTCCGTCTCCGACGCCGTCGCCAATGTCACGTTGCTCCTGAAGGTGCTGAAGGACAAGAATCTGGTTCTCGAGAGCGTTTCGAGTCTGCGGAACACGGAGGCAGAAGAGGAGGAGGAGAAGAAGCAATTCGAAGAGGTTGTCGAACACGTAAAGGAGGTTGTGATGGTTGAGGAATCTGCTAGGGTTGAAAAGAGGATCTCGTTGCGGATAGGTTCCGAAGGAGAAGAGGTTCGACAAATGCAGGAAGCATTGTTGAAATTGGGGTTTTACTCTGGCGAGGAAGACATGGAGTATTCCAGCTTCTCAAGTGGAACTGAGCGTGCTGTGAAGACTTGGCAAGCTGCACTAGGTGCCCCTGAGGATGGTATCATGACAGCTGAACTTCTTGAAAGGTTGTATTTGGAGATAAGGAATAAGGGCACAGGTAGTGCGACTCAAGACAAACAATCTACTACTGTTTTGCCAAAGGAAGTTGAAAATGGAGCTGCAGTTGCTTCAGTGGCAGAAAATTCAGAGGTTCAGCAAAAAGATGTGAAAAATGATAAGGAAACAGAAGTCTCCCACCGGGGAGTTTTTCTCCTTGGAGAGAATCGGTGGGAAGAACCATCAAGACTTGTTGCAAGGGATGGAGTTGATAAGAGCAAGAACAAGGATATGACAACAAAATGCCTTCAATGTCGTGGGGAAGGTCGCTTGATGTGTACAGAATGTGATGGATCTGGCGAGCCAAATATTGAACCTCAATTTATTGAATGGGTGGAAGAGGGTACAAAATGCCCATATTGTAAAGGCCTAGGGTATACTGTATGTGATCTATGTGGAGGGAAAACTATGGTATAG

>Glyma10g33590.5   sequence type=CDS   gene model=Glyma10g33590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAACTGAAACATCCATCCATGGCCTCCATCATCCAAATTTTACAATGTTATCAATTCTTCTCCCAGTGACAGCAACTCCCATTTCCACTCTCACCAAAACCCTCCCTCTCTCAAATCACTACTTACTCTCCTATAAATTCAAATTCAACTCCCTCGTCCGCCATTGCTCCCTCTCCGACCGCGAGGAGCAGCGCTGGCTCCGCGAGGAGCAGCGCTGGCTCCGCGACGAACGGCGCTGGCTCCGCGAGGAGCAGCGCTGGGCTCGCGAGCGCGACCAGCTCCTCCGCGAGATCGCCGACCTCAACCTCCAAATCCAGGCGCTTGAGCGTCGCCTCTCGATGCGCGATTTGTCCTCTCCGGCTTCCGTCTCCGACGCCGTCGCCAATGTCACGTTGCTCCTGAAGGTGCTGAAGGACAAGAATCTGGTTCTCGAGAGCGTTTCGAGTCTGCGGAACACGGAGGCAGAAGAGGAGGAGGAGAAGAAGCAATTCGAAGAGGTTGTCGAACACGTAAAGGAGGTTGTGATGGTTGAGGAATCTGCTAGGGTTGAAAAGAGGATCTCGTTGCGGATAGGTTCCGAAGGAGAAGAGGTTCGACAAATGCAGGAAGCATTGTTGAAATTGGGGTTTTACTCTGGCGAGGAAGACATGGAGTATTCCAGCTTCTCAAGTGGAACTGAGCGTGCTGTGAAGACTTGGCAAGCTGCACTAGGTGCCCCTGAGGATGGTATCATGACAGCTGAACTTCTTGAAAGGTTGTATTTGGAGATAAGGAATAAGGGCACAGGTAGTGCGACTCAAGACAAACAATCTACTACTGTTTTGCCAAAGGAAGTTGAAAATGGAGCTGCAGTTGCTTCAGTGGCAGAAAATTCAGAGGTTCAGCAAAAAGATGTGAAAAATGATAAGGAAACAGAAGTCTCCCACCGGGGAGTTTTTCTCCTTGGAGAGAATCGGTGGGAAGAACCATCAAGACTTGTTGCAAGGGATGGAGTTGATAAGAGCAAGAACAAGGATATGACAACAAAATGCCTTCAATGTCGTGGGGAAGGTCGCTTGATGTGTACAGAATGTGATGGATCTGGCGAGCCAAATATTGAACCTCAATTTATTGAATGGGTGGAAGAGGGTACAAAATGCCCATATTGTAAAGGCCTAGGGTATACTGTATGTGATCTATGTGGAGGGAAAACTATGGTATAG

Predicted protein sequences of Glyma10g33590

Limit To All Plant Sequences

>Glyma10g33590.3   sequence type=predicted peptide   gene model=Glyma10g33590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MITETSIHGLHHPNFTMLSILLPVTATPISTLTKTLPLSNHYLLSYKFKFNSLVRHCSLSDREEQRWLREEQRWLRDERRWLREEQRWARERDQLLREIADLNLQIQALERRLSMRDLSSPASVSDAVANVTLLLKVLKDKNLVLESVSSLRNTEAEEEEEKKQFEEVVEHVKEVVMVEESARVEKRISLRIGSEGEEVRQMQEALLKLGFYSGEEDMEYSSFSSGTERAVKTWQAALGAPEDGIMTAELLERLYLEIRNKGTGSATQDKQSTTVLPKEVENGAAVASVAENSEVQQKDVKNDKETEVSHRGVFLLGENRWEEPSRLVARDGVDKSKNKDMTTKCLQCRGEGRLMCTECDGSGEPNIEPQFIEWVEEGTKCPYCKGLGYTVCDLCGGKTMV*

>Glyma10g33590.4   sequence type=predicted peptide   gene model=Glyma10g33590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MITETSIHGLHHPNFTMLSILLPVTATPISTLTKTLPLSNHYLLSYKFKFNSLVRHCSLSDREEQRWLREEQRWLRDERRWLREEQRWARERDQLLREIADLNLQIQALERRLSMRDLSSPASVSDAVANVTLLLKVLKDKNLVLESVSSLRNTEAEEEEEKKQFEEVVEHVKEVVMVEESARVEKRISLRIGSEGEEVRQMQEALLKLGFYSGEEDMEYSSFSSGTERAVKTWQAALGAPEDGIMTAELLERLYLEIRNKGTGSATQDKQSTTVLPKEVENGAAVASVAENSEVQQKDVKNDKETEVSHRGVFLLGENRWEEPSRLVARDGVDKSKNKDMTTKCLQCRGEGRLMCTECDGSGEPNIEPQFIEWVEEGTKCPYCKGLGYTVCDLCGGKTMV*

>Glyma10g33590.5   sequence type=predicted peptide   gene model=Glyma10g33590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MITETSIHGLHHPNFTMLSILLPVTATPISTLTKTLPLSNHYLLSYKFKFNSLVRHCSLSDREEQRWLREEQRWLRDERRWLREEQRWARERDQLLREIADLNLQIQALERRLSMRDLSSPASVSDAVANVTLLLKVLKDKNLVLESVSSLRNTEAEEEEEKKQFEEVVEHVKEVVMVEESARVEKRISLRIGSEGEEVRQMQEALLKLGFYSGEEDMEYSSFSSGTERAVKTWQAALGAPEDGIMTAELLERLYLEIRNKGTGSATQDKQSTTVLPKEVENGAAVASVAENSEVQQKDVKNDKETEVSHRGVFLLGENRWEEPSRLVARDGVDKSKNKDMTTKCLQCRGEGRLMCTECDGSGEPNIEPQFIEWVEEGTKCPYCKGLGYTVCDLCGGKTMV*

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