SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G33255 | AT | Annotation by Michelle Graham. TAIR10: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr2:14098795-14100358 FORWARD LENGTH=245 | SoyBase | E_val: 9.00E-113 | ISS |
| GO:0006949 | GO-bp | Annotation by Michelle Graham. GO Biological Process: syncytium formation | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0008967 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphoglycolate phosphatase activity | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| KOG3085 | KOG | Predicted hydrolase (HAD superfamily) | JGI | ISS | |
| PTHR19288 | Panther | 4-NITROPHENYLPHOSPHATASE-RELATED | JGI | ISS | |
| PTHR19288:SF15 | Panther | N-ACETYLGLUCOSAMINE-6-PHOSPHATE DEACETYLASE | JGI | ISS | |
| PF00702 | PFAM | haloacid dehalogenase-like hydrolase | JGI | ISS | |
| UniRef100_G7I2P1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Phosphoglycolate phosphatase n=1 Tax=Medicago truncatula RepID=G7I2P1_MEDTR | SoyBase | E_val: 2.00E-126 | ISS |
| UniRef100_I1LCF9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LCF9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma10g33470 not represented in the dataset |
Glyma10g33470 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g34120 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g191200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g33470.1 sequence type=CDS gene model=Glyma10g33470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCATTGCTCGTATCCAATTGCGCTAAATCCTTTATCCTCTCCACGCTCCCAAAGTCCAAGCAAATGTCCCGTCAAGCTCCCGGCGTCGTCAAAACGCGCCTGAGGGGCGTCGTTTTCGACATGGACGGCACCCTGACCGTCCCGGTGATCGATTTTCCGGCGATGTACAGGGCGGTGCTGGGCGACGAGGAGTACCTGAGGCTCAAAGCGGAAAACCCTTCCGGCATCGACATTTTGGGCCACATCGACGGCTGGCCACCTCACAAACAGCGCAAGGCATTCGACGCCATTGCTGAGGTCGAGCGTCAGGGTCTCGAGCGCCTTCAAATCATGCCTGGTTGTGCTGAGCTTTGTGCGATGCTCGATTCTAAGAAAATAAGGAGGGGTTTGATCACTCGGAACACGAAGTCAGCAGTTGATTTGTTCCATGAAAGGTTTGGGATTACATTTTCTCCAGCATTAAGCAGGGAATTTCGTCCTTATAAACCCGATCCAGGTCCACTACTGCATATTTGTTCTCTTTGGGAAGTTCAACCAAATGAAGTTATAATGATTGGAGATAGCCTTAAAGATGATGTGCCTTGTGGAAGGCAAGCAGGAGCCTTTACATGCTTGCTTGATCAAACAGGAGTATATGATTCTCCCGAGTATGCTGATGTTGAATTTAAACCAGATTTCAAGGTGACTTCCCTTGATGAAGTTCACTCAGTTCTGAAGGAAAATTTTGATTTGTCACCATGA
>Glyma10g33470.1 sequence type=predicted peptide gene model=Glyma10g33470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPLLVSNCAKSFILSTLPKSKQMSRQAPGVVKTRLRGVVFDMDGTLTVPVIDFPAMYRAVLGDEEYLRLKAENPSGIDILGHIDGWPPHKQRKAFDAIAEVERQGLERLQIMPGCAELCAMLDSKKIRRGLITRNTKSAVDLFHERFGITFSPALSREFRPYKPDPGPLLHICSLWEVQPNEVIMIGDSLKDDVPCGRQAGAFTCLLDQTGVYDSPEYADVEFKPDFKVTSLDEVHSVLKENFDLSP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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