Report for Sequence Feature Glyma10g33420
Feature Type: gene_model
Chromosome: Gm10
Start: 41780609
stop: 41784382
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma10g33420
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G25360 AT
Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein | chr1:8894428-8896800 FORWARD LENGTH=790
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PTHR24015 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24015:SF102 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF01535 PFAM
PPR repeat
JGI ISS
UniRef100_G7I2Q7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7I2Q7_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1LCF4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LCF4_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma10g33420
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma10g33420
Paralog Evidence Comments
Glyma20g34220 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma10g33420 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.10g190600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma10g33420
Coding sequences of Glyma10g33420
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g33420.1 sequence type=CDS gene model=Glyma10g33420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGACATTTGGACAATGGGTAATCGTTACTTGGCCCAACTCTCACACACTTCCTTCGCACGTGCCGTCCACGCTCACATCCTCACCTCCGGCTTCAAGCCATTCCCTCTCATCATCAACCGCCTCATCGATCATTACTGCAAATCCTTCAACATCCCCTACGCCCGCTACCTGTTCGACAAAATTCCCAAACCAGACATCGTCGCCGCAACCACCATGCTTTCCGCCTACTCCGCTGCCGGCAACATCAAACTCGCTCACCAACTCTTCAACGCTACACCAATGTCCATTCGTGACACCGTCAGTTACAATGCCATGATCACTGCCTTTTCCCACAGCCATGATGGTCATGCTGCTCTTCAACTCTTCGTACAAATGAAAAGGCTCGGTTTTGTCCCCGACCCCTTTACCTTCTCAAGCGTTCTTGGCGCACTGTCGTTGATAGCTGATGAAGAGACGCATTGTCAGCAATTGCACTGTGAGGTTTTTAAGTGGGGTGCACTCTCTGTGCCTTCTGTTTTGAATGCTTTGATGAGTTGCTATGTTTCTTGCGCCTCTTCGCCGTTGGTGAACTCTTGTGTGTTGATGGCTGCTGCTAGGAAGCTATTTGATGAGGCACCTCCCGGTCGGAGGGATGAACCTGCTTGGACTACCATCATTGCTGGCTATGTCAGGAATGATGACCTTGTTGCAGCGCGTGAGCTTCTTGAAGGAATGACTGATCACATTGCTGTTGCATGGAATGCCATGATTTCTGGCTACGTGCACCGCGGTTTTTATGAGGAGGCATTTGACTTGTTGAGGAGAATGCATTCATTGGGAATTCAGCTGGATGAGTACACTTACACCAGTGTAATTAGTGCTGCTTCTAATGCTGGGTTGTTCAATATTGGAAGACAGGTGCATGCTTACGTTCTCAGAACAGTGGTGCAGCCTTCAGGGCATTTTGTTTTATCTGTGAATAATGCTTTGATTACTCTCTACACCAGATGTGGTAAACTAGTTGAGGCCAGGCGAGTTTTCGATAAGATGCCGGTGAAAGATCTTGTTTCGTGGAATGCAATTTTGTCTGGGTGTGTCAATGCCCGACGCATTGAGGAAGCTAACTCCATTTTCAGGGAGATGCCGGTGAGGAGCCTGTTAACGTGGACTGTGATGATATCGGGCTTGGCACAAAATGGTTTTGGAGAAGAAGGTTTGAAGCTATTCAACCAGATGAAGTTAGAGGGACTGGAACCGTGTGATTATGCATATGCTGGAGCAATTGCCTCTTGTTCTGTTCTTGGATCATTAGACAATGGGCAACAACTACACTCTCAGATAATCCAATTAGGTCATGATTCAAGCCTCTCAGTTGGCAATGCACTGATTACAATGTATTCAAGGTGTGGTCTTGTTGAAGCTGCCGATACAGTGTTTCTCACAATGCCGTATGTGGATTCAGTATCCTGGAATGCCATGATTGCAGCTCTTGCACAGCATGGACATGGTGTCCAAGCGATTCAACTTTATGAAAAGATGTTGAAGGAAGATATATTACCTGATAGGATAACTTTTCTCACAATTCTTTCTGCTTGTAGCCATGCAGGTTTGGTCAAAGAGGGACGCCATTATTTTGATACAATGCGTGTTTGTTATGGTATAACCCCAGAAGAGGATCACTATTCTCGTTTGATTGATTTGTTATGTCGTGCTGGTATGTTCTCAGAAGCCAAGAATGTCACTGAATCAATGCCTTTTGAGCCCGGTGCACCAATTTGGGAGGCTCTTCTTGCTGGTTGTTGGATTCATGGGAACATGGAATTAGGTATTCAAGCTGCTGATCGACTCCTAGAGCTTATGCCACAGCAAGATGGAACCTACATAAGCCTTTCCAATATGTATGCTGCTTTAGGTCAGTGGGATGAAGTTGCCAGGGTGAGAAAATTAATGAGGGAGCGAGGGGTTAAGAAGGAACCTGGTTGTAGTTGGATTGAGGTTGAAAACATGGTCCATGTCTTTTTGGTTGATGATGCTGTGCACCCTGAGGTGCATGCAGTGTACAGATATCTGGAGCAACTGGTACATGAAATGAGGAAATTGGGTTATGTTCCTGATACAAAGTTTGTATTACATGATATGGAATCTGAACAAAAGGAATATGCTTTGTCTACTCATAGTGAAAAACTTGCTGTTGTTTATGGAATTATGAAACTCCCTTTGGGAGCTACAATTCGGGTTTTCAAAAATTTGAGGATATGCGGGGACTGCCATAATGCATTCAAGTATATTTCTAAAGTAGTGGACCGAGAGATAATTGTGAGAGATAGGAAGCGGTTTCACCATTTTAGAAATGGTGAATGTTCTTGTAGCAACTACTGGTAG
Predicted protein sequences of Glyma10g33420
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma10g33420.1 sequence type=predicted peptide gene model=Glyma10g33420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDIWTMGNRYLAQLSHTSFARAVHAHILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIVAATTMLSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLGFVPDPFTFSSVLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSCASSPLVNSCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEGRHYFDTMRVCYGITPEEDHYSRLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAGCWIHGNMELGIQAADRLLELMPQQDGTYISLSNMYAALGQWDEVARVRKLMRERGVKKEPGCSWIEVENMVHVFLVDDAVHPEVHAVYRYLEQLVHEMRKLGYVPDTKFVLHDMESEQKEYALSTHSEKLAVVYGIMKLPLGATIRVFKNLRICGDCHNAFKYISKVVDREIIVRDRKRFHHFRNGECSCSNYW*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
