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Report for Sequence Feature Glyma10g33080

Feature Type:gene_model
Chromosome:Gm10
Start:41462051
stop:41462494
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g33080
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G23230AT Annotation by Michelle Graham. TAIR10: Integrase-type DNA-binding superfamily protein | chr3:8289647-8290066 REVERSE LENGTH=139 SoyBaseE_val: 3.00E-41ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009873GO-bp Annotation by Michelle Graham. GO Biological Process: ethylene mediated signaling pathway SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PF00847PFAM AP2 domain JGI ISS
UniRef100_B9HU98UniRef Annotation by Michelle Graham. Most informative UniRef hit: AP2/ERF domain-containing transcription factor n=1 Tax=Populus trichocarpa RepID=B9HU98_POPTR SoyBaseE_val: 4.00E-39ISS
UniRef100_I1LCB9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LCB9_SOYBN SoyBaseE_val: 1.00E-101ISS

Expression Patterns of Glyma10g33080
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g33080
ParalogEvidenceComments
Glyma20g34550 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g33080 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g187000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g33080
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g33080
>Glyma10g33080.1   sequence type=CDS   gene model=Glyma10g33080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGAAGAAGGGTCAAGGGGGAGGGCCAAGGAGGACGCCGGAGATGTCCGGTACCGGGGGGTCCGGCGGCGGCCCTGGGGGAAGTTCGCGGCGGAGATTCGAGACTCGACGAGGCAGGGTCAGAGGGTGTGGCTGGGGACTTTCAACACGGCGGAGGAAGCGGCCAGAGCCTATGATAGAGCTGCTTATACCATGAGAGGTCCATTTGCAATCCTTAACTTTCCTGATGAGTACCCTGTGACTGCTGCTGGTGCCACTAATGCTGCCACTTATTCTTCTGCTTCATCATCATCATCCTTGGCCTCTTCTTCTCGGCATGCCGATGTGGAAGCTAGAGGAAGAAGTGAGCAAGGAAGAGAAGTGTTTGAGTTTGAGTACTTGGATGATAAGTTGTTGGAGGAGCTTCTTGATTGTGAGAACAAAAAGAAAAGAGGACCCTGA
Predicted protein sequences of Glyma10g33080
>Glyma10g33080.1   sequence type=predicted peptide   gene model=Glyma10g33080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDEEGSRGRAKEDAGDVRYRGVRRRPWGKFAAEIRDSTRQGQRVWLGTFNTAEEAARAYDRAAYTMRGPFAILNFPDEYPVTAAGATNAATYSSASSSSSLASSSRHADVEARGRSEQGREVFEFEYLDDKLLEELLDCENKKKRGP*






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