Glyma10g33020 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma10g33020): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma10g33020): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma10g33020

Feature Type:	gene_model
Chromosome:	Gm10
Start:	41379819
stop:	41384065
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g33020

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G38940	AT	Annotation by Michelle Graham. TAIR10: phosphate transporter 1;4 \| chr2:16258500-16260104 FORWARD LENGTH=534	SoyBase	E_val: 0	ISS
GO:0006817	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphate ion transport	SoyBase	N/A	ISS
GO:0006857	GO-bp	Annotation by Michelle Graham. GO Biological Process: oligopeptide transport	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005315	GO-mf	Annotation by Michelle Graham. GO Molecular Function: inorganic phosphate transmembrane transporter activity	SoyBase	N/A	ISS
GO:0005351	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sugar:hydrogen symporter activity	SoyBase	N/A	ISS
GO:0015114	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphate ion transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015144	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbohydrate transmembrane transporter activity	SoyBase	N/A	ISS
GO:0022857	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transmembrane transporter activity	SoyBase	N/A	ISS
KOG0252	KOG	Inorganic phosphate transporter	JGI		ISS
PTHR24064	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24064:SF16	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00083	PFAM	Sugar (and other) transporter	JGI		ISS
UniRef100_E8Z9A4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Phosphate transporter1-6 n=1 Tax=Glycine max RepID=E8Z9A4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_E8Z9A4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phosphate transporter1-6 n=1 Tax=Glycine max RepID=E8Z9A4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g33020

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g33020 not represented in the dataset	Glyma10g33020 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g33020

Paralog	Evidence	Comments
Glyma20g34620	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g33020 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g186400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g33020

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g33020

Limit To All Plant Sequences

>Glyma10g33020.3   sequence type=transcript   gene model=Glyma10g33020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCATCATGGTTCATTTATTTGCTCTTATTAACTAGAATCACGCGCACCCTTGTCCAACACCGCCTTCTAGTTATTTATACTATCTTCTGATCTTTTCTGATTGTATTTCAGGTTAAGCTTAGGTACCTGGGAGATTGAAGTAAAGTAAGAAAATTTTGTGACAAAAGATACACAGATATGGCCAGGGATCAGTTGCAAGTGCTTAATGCACTCGATGTTGCCAAGACACAATGGTACCATTTCACAGCAATTGTGATTGCTGGAATGGGTTTCTTCACTGATGCATATGATCTTTTTTGCATCTCCCTTGTCACCAAATTGCTTGGCCGCATATACTACTTTGAAGGCCACGACAAGCCAGGCTCTCTGCCATCAAATGTTTCTGCTGCCATCAATGGTGTTGCATTCTGTGGAACCCTTGCAGGCCAGCTTTTCTTTGGCTGGCTTGGTGATAAAATGGGAAGGAAACGTGTCTACGGAATGACCCTTATGCTCATGGTGATATGCTCAATTGCTTCTGGTCTTTCTTTTGGCAAAGACCCTAAAGCTGTTATGGCCACCCTTTGCTTCTTCCGTTTCTGGCTTGGATTTGGCATTGGTGGTGACTACCCTCTTTCGGCCACTATCATGTCTGAGTATGCCAACAAGAAGACTCGTGGAGCATTCATAGCTGCTGTTTTTGCAATGCAAGGTTTTGGAATTTTGGCTGGTGGCACGGTTGCAATTGTTGTTTCATCTGCTTTCAAGGCCTTGTACCCTGCTCCAGCATTCCAGGTTAACCCAGTTTTGTCCACAGTGCCACAAGCTGATTATGTTTGGAGGATAATCTTGATGTTTGGTGCACTCCCAGCTCTGCTCACATACTATTGGCGTATGAAAATGCCTGAGACTGCAAGATACACTGCCTTGGTTGCCAAGAATGCCAAGCAGGCAGCTGCAGATATGTCAAAGGTGCTGCAAGTTGAGATAGAAGCTGAACAGGAGAAAGTTGAGCAATTGGACACAAGAAAAGGGAATGAATTTGGATTGTTCACAAAACAGTTCCTTCGCCGCCATGGACTTCACCTTCTTGGAACAGCCGTTACTTGGTTCCTGTTGGACATTGCCTATTATAGTCAGAATCTTTTCCAGAAAGACATCTTCAGTACAATTGGTTGGATTCCTGAAGCAAAAACCATGAATGCCATTGAAGAGGTTTTCAAAATTGCTAGAGCACAGACCCTCATAGCCCTTTGCAGTACTGTACCTGGTTACTGGTTCACAGTGGCACTCATTGATAAGATGGGAAGGTTTACAATTCAATTGATGGGATTTTTCTTCATGACAGTGTTCATGTTTGCCTTGGCTATTCCATACCACCACTGGACCATGAAGGGCAACCAAATTGGGTTTGTTGTGCTGTACTCATTGACCTTCTTCTTTGCCAATTTTGGTCCAAATGCCACAACATTCGTGGTGCCGGCAGAGATTTTCCCAGCAAGGCTAAGGTCTACATGCCATGGTATATCGGCTGCAGCAGGGAAAGCTGGGGCAATGGTAGGGGCTTTTGGCTACCTGTATACTCAAAATGCCATTGGACTGAGAAATACACTTATAGTTTTGGGAGTGGTTAACTTCTTGGGGCTGCTGTTTACATTCTTGGTGCCTGAATCTAAAGGAAAATCCCTGGAGGAGATGTCTGGTGAGGCTGAAGAAGAGACTACTGCTGCTACAAGAGAATCAGCAATGGAGGCTGGTCTTGAAGTTAGGTCTTCTGTCTAACTGCATGAATAAAGCAGAGTGGCCCCATCGTTGATTTTTATTCGTTTAAGGTTGCTATCAAAGAGCTCGAAGACAAAGCACAGTTAACGACATTGCGGTTGAAGCCAAAACTGTCATACTCCCATTTCTGTTCCTTATAATACACGTGTACATTACCCTAACATTGAAG

Coding sequences of Glyma10g33020

Limit To All Plant Sequences

>Glyma10g33020.2   sequence type=CDS   gene model=Glyma10g33020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAGGGATCAGTTGCAAGTGCTTAATGCACTCGATGTTGCCAAGACACAATGGTACCATTTCACAGCAATTGTGATTGCTGGAATGGGTTTCTTCACTGATGCATATGATCTTTTTTGCATCTCCCTTGTCACCAAATTGCTTGGCCGCATATACTACTTTGAAGGCCACGACAAGCCAGGCTCTCTGCCATCAAATGTTTCTGCTGCCATCAATGGTGTTGCATTCTGTGGAACCCTTGCAGGCCAGCTTTTCTTTGGCTGGCTTGGTGATAAAATGGGAAGGAAACGTGTCTACGGAATGACCCTTATGCTCATGGTGATATGCTCAATTGCTTCTGGTCTTTCTTTTGGCAAAGACCCTAAAGCTGTTATGGCCACCCTTTGCTTCTTCCGTTTCTGGCTTGGATTTGGCATTGGTGGTGACTACCCTCTTTCGGCCACTATCATGTCTGAGTATGCCAACAAGAAGACTCGTGGAGCATTCATAGCTGCTGTTTTTGCAATGCAAGGTTTTGGAATTTTGGCTGGTGGCACGGTTGCAATTGTTGTTTCATCTGCTTTCAAGGCCTTGTACCCTGCTCCAGCATTCCAGGTTAACCCAGTTTTGTCCACAGTGCCACAAGCTGATTATGTTTGGAGGATAATCTTGATGTTTGGTGCACTCCCAGCTCTGCTCACATACTATTGGCGTATGAAAATGCCTGAGACTGCAAGATACACTGCCTTGGTTGCCAAGAATGCCAAGCAGGCAGCTGCAGATATGTCAAAGGTGCTGCAAGTTGAGATAGAAGCTGAACAGGAGAAAGTTGAGCAATTGGACACAAGAAAAGGGAATGAATTTGGATTGTTCACAAAACAGTTCCTTCGCCGCCATGGACTTCACCTTCTTGGAACAGCCGTTACTTGGTTCCTGTTGGACATTGCCTATTATAGTCAGAATCTTTTCCAGAAAGACATCTTCAGTACAATTGGTTGGATTCCTGAAGCAAAAACCATGAATGCCATTGAAGAGGTTTTCAAAATTGCTAGAGCACAGACCCTCATAGCCCTTTGCAGTACTGTACCTGGTTACTGGTTCACAGTGGCACTCATTGATAAGATGGGAAGGTTTACAATTCAATTGATGGGATTTTTCTTCATGACAGTGTTCATGTTTGCCTTGGCTATTCCATACCACCACTGGACCATGAAGGGCAACCAAATTGGGTTTGTTGTGCTGTACTCATTGACCTTCTTCTTTGCCAATTTTGGTCCAAATGCCACAACATTCGTGGTGCCGGCAGAGATTTTCCCAGCAAGGCTAAGGTCTACATGCCATGGTATATCGGCTGCAGCAGGGAAAGCTGGGGCAATGGTAGGGGCTTTTGGCTACCTGTATACTCAAAATGCCATTGGACTGAGAAATACACTTATAGTTTTGGGAGTGGTTAACTTCTTGGGGCTGCTGTTTACATTCTTGGTGCCTGAATCTAAAGGAAAATCCCTGGAGGAGATGTCTGGTGAGGCTGAAGAAGAGACTACTGCTGCTACAAGAGAATCAGCAATGGAGGCTGGTCTTGAAGTTAGGTCTTCTGTCTAA

>Glyma10g33020.3   sequence type=CDS   gene model=Glyma10g33020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAGGGATCAGTTGCAAGTGCTTAATGCACTCGATGTTGCCAAGACACAATGGTACCATTTCACAGCAATTGTGATTGCTGGAATGGGTTTCTTCACTGATGCATATGATCTTTTTTGCATCTCCCTTGTCACCAAATTGCTTGGCCGCATATACTACTTTGAAGGCCACGACAAGCCAGGCTCTCTGCCATCAAATGTTTCTGCTGCCATCAATGGTGTTGCATTCTGTGGAACCCTTGCAGGCCAGCTTTTCTTTGGCTGGCTTGGTGATAAAATGGGAAGGAAACGTGTCTACGGAATGACCCTTATGCTCATGGTGATATGCTCAATTGCTTCTGGTCTTTCTTTTGGCAAAGACCCTAAAGCTGTTATGGCCACCCTTTGCTTCTTCCGTTTCTGGCTTGGATTTGGCATTGGTGGTGACTACCCTCTTTCGGCCACTATCATGTCTGAGTATGCCAACAAGAAGACTCGTGGAGCATTCATAGCTGCTGTTTTTGCAATGCAAGGTTTTGGAATTTTGGCTGGTGGCACGGTTGCAATTGTTGTTTCATCTGCTTTCAAGGCCTTGTACCCTGCTCCAGCATTCCAGGTTAACCCAGTTTTGTCCACAGTGCCACAAGCTGATTATGTTTGGAGGATAATCTTGATGTTTGGTGCACTCCCAGCTCTGCTCACATACTATTGGCGTATGAAAATGCCTGAGACTGCAAGATACACTGCCTTGGTTGCCAAGAATGCCAAGCAGGCAGCTGCAGATATGTCAAAGGTGCTGCAAGTTGAGATAGAAGCTGAACAGGAGAAAGTTGAGCAATTGGACACAAGAAAAGGGAATGAATTTGGATTGTTCACAAAACAGTTCCTTCGCCGCCATGGACTTCACCTTCTTGGAACAGCCGTTACTTGGTTCCTGTTGGACATTGCCTATTATAGTCAGAATCTTTTCCAGAAAGACATCTTCAGTACAATTGGTTGGATTCCTGAAGCAAAAACCATGAATGCCATTGAAGAGGTTTTCAAAATTGCTAGAGCACAGACCCTCATAGCCCTTTGCAGTACTGTACCTGGTTACTGGTTCACAGTGGCACTCATTGATAAGATGGGAAGGTTTACAATTCAATTGATGGGATTTTTCTTCATGACAGTGTTCATGTTTGCCTTGGCTATTCCATACCACCACTGGACCATGAAGGGCAACCAAATTGGGTTTGTTGTGCTGTACTCATTGACCTTCTTCTTTGCCAATTTTGGTCCAAATGCCACAACATTCGTGGTGCCGGCAGAGATTTTCCCAGCAAGGCTAAGGTCTACATGCCATGGTATATCGGCTGCAGCAGGGAAAGCTGGGGCAATGGTAGGGGCTTTTGGCTACCTGTATACTCAAAATGCCATTGGACTGAGAAATACACTTATAGTTTTGGGAGTGGTTAACTTCTTGGGGCTGCTGTTTACATTCTTGGTGCCTGAATCTAAAGGAAAATCCCTGGAGGAGATGTCTGGTGAGGCTGAAGAAGAGACTACTGCTGCTACAAGAGAATCAGCAATGGAGGCTGGTCTTGAAGTTAGGTCTTCTGTCTAA

Predicted protein sequences of Glyma10g33020

Limit To All Plant Sequences

>Glyma10g33020.2   sequence type=predicted peptide   gene model=Glyma10g33020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MARDQLQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYFEGHDKPGSLPSNVSAAINGVAFCGTLAGQLFFGWLGDKMGRKRVYGMTLMLMVICSIASGLSFGKDPKAVMATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILAGGTVAIVVSSAFKALYPAPAFQVNPVLSTVPQADYVWRIILMFGALPALLTYYWRMKMPETARYTALVAKNAKQAAADMSKVLQVEIEAEQEKVEQLDTRKGNEFGLFTKQFLRRHGLHLLGTAVTWFLLDIAYYSQNLFQKDIFSTIGWIPEAKTMNAIEEVFKIARAQTLIALCSTVPGYWFTVALIDKMGRFTIQLMGFFFMTVFMFALAIPYHHWTMKGNQIGFVVLYSLTFFFANFGPNATTFVVPAEIFPARLRSTCHGISAAAGKAGAMVGAFGYLYTQNAIGLRNTLIVLGVVNFLGLLFTFLVPESKGKSLEEMSGEAEEETTAATRESAMEAGLEVRSSV*

>Glyma10g33020.3   sequence type=predicted peptide   gene model=Glyma10g33020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MARDQLQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYFEGHDKPGSLPSNVSAAINGVAFCGTLAGQLFFGWLGDKMGRKRVYGMTLMLMVICSIASGLSFGKDPKAVMATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILAGGTVAIVVSSAFKALYPAPAFQVNPVLSTVPQADYVWRIILMFGALPALLTYYWRMKMPETARYTALVAKNAKQAAADMSKVLQVEIEAEQEKVEQLDTRKGNEFGLFTKQFLRRHGLHLLGTAVTWFLLDIAYYSQNLFQKDIFSTIGWIPEAKTMNAIEEVFKIARAQTLIALCSTVPGYWFTVALIDKMGRFTIQLMGFFFMTVFMFALAIPYHHWTMKGNQIGFVVLYSLTFFFANFGPNATTFVVPAEIFPARLRSTCHGISAAAGKAGAMVGAFGYLYTQNAIGLRNTLIVLGVVNFLGLLFTFLVPESKGKSLEEMSGEAEEETTAATRESAMEAGLEVRSSV*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain