Glyma10g32560 - SoyBase

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Report for Sequence Feature Glyma10g32560

Feature Type:	gene_model
Chromosome:	Gm10
Start:	41014729
stop:	41024237
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g32560

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G43310	AT	Annotation by Michelle Graham. TAIR10: COP1-interacting protein-related \| chr5:17379735-17385387 REVERSE LENGTH=1180	SoyBase	E_val: 0	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
UniRef100_G7I4V2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: COP1-interacting protein n=1 Tax=Medicago truncatula RepID=G7I4V2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233D4DC	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233D4DC related cluster n=1 Tax=unknown RepID=UPI000233D4DC	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g32560

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g32560

Paralog	Evidence	Comments
Glyma20g35020	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g32560 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g182300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g32560

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g32560

Limit To All Plant Sequences

>Glyma10g32560.2   sequence type=CDS   gene model=Glyma10g32560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACACTTCAACAAGGTTGGATTCAGCTGTGTTTCAGCTCACACCCACTAGAACAAGGTTTGACTTAATTATAACTGTGAATGGAAAGAAGGAGAAGATTGCCTCAGGCTTGCTCAACCCTTTTCTTTCTCACTTGAAGGCTGCCCAGAATCAGATGGACAAGGGTGGTTATTCAATTGTTCTTGAGCCGCCCGAGGGTAACACTGATACCTCATGGTTTACCAAGGGAACTGTTGAAAGGTTTGTTCGTTTTGTGAGCACTCCTGAGATCTTGGAACGTGTGTATACTACAGAATCAGAAATCTTACAGATTGAAGAGGCAATTGCAATTCAAGGAAATAGTTCTTTAGGTTTTAGCACTGTGGAAGAAAATCAAGTAAAACATGTTGAAAGCACTGAAGGCAGGAAGACTCGGGAGGATACTAATGAGGAGAGAGCAATTGTACTTTACAAGCCTGATGCACAGCCACCTCAAGCAAATGGAAGCACCACATTGGAAGGAAGCTCAAAAGTTCATCTTCTGAAAGTCCTAGAGACACGTAAGTCAGCATTGCAGAAAGAGCAAGGCATGGCATTTGCTCGTGCTGTTGCTGCTGGTTTTGACATTGACTATATACCGCCTTTGATGTCATTTGCTGAATGCTTTGGTGCATCTCGCATGAAGGATGCATGCACAAAATTCAGGGATCTTTGGAGAAGAAAACATGAAACTGGACAATGGCTTGAAATTGAAGCTGCTGAAACGATGTCCAATCGCTCTGACTTTTCTCCGTTAAATGTTTCTGGCATTATACTTCCCAGTATGGCCTCTGCATCCCATACTGAATTGGACTCTGAGAGTAATGGGAAAGCAAGTTCAGATGTGCCTCCAATGGACCGCCAACCATCTGTAGGCAACCATGATAATATTCAAGGTCAATTTCCACACCATATGTTCCCTCCTTGGCCTGTTCATTCTCCCCCAGGTTCTGTTCCAGTCTTTTCACCATATCCAGTGCAAGGCATTCCCTACTATCCAGCATATCCAGGAAACAGTCCATTTATGCAGCCAAATTATTCTCCTATGGAGGACCCCAGACTAACTGCTGGTCAAAATAACGGGCGCAGAAGGCATTCCATGGATAGTAGACACAGCAATACTGAACCAGAAACGCAGGATGAAGTGGATATGGAGAGGGAAGGCTTGCATACTGGAGATCAAAGGAAGAAGGATAGGCGATCAGCTAGACAGAAATCTGGCATGGTGGTCATTCGGAACATCAATTACATAACAAAGGCAGAAAATTCTGGCAGTGGATCATATTCAGATTCTGCCTCAGAAACTGATGAAGATAATAAGGAATCTGTGAAGACCTCTAAGAGAAGGGAACCCGGAAAAGAATCTTTGAAGAAATTGGATTCATCTGATATGGAAGAAACTGAGCATGGGAAGGATGCTGATGGAGGCCACTGGCAAGCATTCCAAAATTGTTTACTAAGAGATGTTGATGAAGATAGACATGCCATTGACAAAGACCAATTTGATCAGGAAAAGGTGCATGACGTGAGAAGAAAAAAACATATTGCAATCAATGATCCTTTAGTTTTTAATGACCGGGAAATGCATGAAGTCCAAGGAAGTTCTGCTATAGATATGCATAGCATTAGCAAAGGATTGACTCACATGCCTAAGACATCCAATGATGATTTATTGTTATCTGCAAGTGCAGGACAGTCTGGTGATGGTTGGTCTGGAGATGATGTACAATCTTTAGAAGCAAATGGAAAAAGGGGTGGTTATAGGAGGGCTGCCCGTGATGATTTCATCATTTCCAAGCAAGAAAATCAATTTGGCAATGCTTACCCTTCCTCAGATGTTGAAACTTCACTAGGTTATTCAAACAATAAACTAGAAAGGAAGTTGTTTCATGATATGAATGATGATTCCTACATATTGGAGCATAGATCAATGGAAGTCAATGATGCAGGAAATGTTGAGAGAAATGCTATTGACATGGACTCTGAGATCCCAATGGTGCAGCGATCTTCAGATGAGATAAACTGTATCAATTATGAGCCAGATGAATTGAGCATGTTGCCTGAACGAGGAGCTGAAAGTGCATCAATGAGTTATGACCCTGCTTTAGACTATGAAATGCAGGCCCAGGCTGGTGGTACTTTACAAAATAAGAACAAAGAGGTATTGACTGACACCAAACCAGGATCTAAGAGGTTGGATAAGGAGGCAAAATCAAAACTTACCCCAAATAATTCTGATAAAAGAAAGACTGGTGGGCCGATAAGGAGAGGGAAGACTTCTAAACCTAATGCTTTGGATGAAGCACGAGCACGTGCTGAGAGCTTACGGAACTACAAAGCGGATCTCCAGAAAATGAAGAAAGAGAAGGAAGAGGAAGAGATGAAACGCCTAGAAGCCTTAAAGATGGAGAGGCAAAAGAGGATTGCTGCCAAGAGTAGCTCAATCACTGCACAGTCGCCATCACAGCTATCCAAGAAACAACTTCCAACAAAACTTTCACCAAACTCTCGTAAAGGGTCAAAATTTAGTGATTCAGAGCCAGGAGCATCCTCGCCCCTTCAAAGATTCCCCGTCAGAACTGCATCTGTTGGATCTAATGATTCTTTGAAAGCCTCAAAAACCAGCAGATTGATTTCCGGAAGCCACTTGGATAGTAACAAATTAAGTCGATCAGTGTCTTCGTTGCCTGAATCTAAGATAGAGAAGGATGATAGCACAACTGATACTAAGGCATCAATGGCAAGGATTAGAAGATTGTCAGAACCTAAAATGAGTAACACTCGTCAGACTTCCTCAGTTAAACCACATGGCACTGGAACAATATCAAAGACTAAAGCAGCTGATGCACCTGAGAGCAAAAAGATTTCTGCTATTGTAAGCCATGATAAAAGCAAGACAGCAGCCCTCCCAGAACTGAAAATCAGAACATCCAAAGCAAGTGACGTTCCTCAGAACAGAACAGCGGTCAAAGAGAAGGCACATAAGTTGAATGATAACAAGTCTTCCATGAATTCACGAGGTACCATGCCGAAGAAAAAGGAAATTGGTACTTCATCCAATGATGATGGAGATGATAATCCTGTAGTTGAGAAGACTGTTGTGATGCTTGAGTGCGAGAAACCTTATGTTCCTCCTATTCATGGTTCTGAAGAAAATTTTGATATACCAAAGAAACAATATGATAATGATGAAGTGACGGAAAAAACAGAAACAACATCCAATTATGCTGCTATTCGTGCTCCTGTTTCACCGTTTAGCATGGATATAACAGATAAAGAAACCTCAGAGAACCAATCACACCTGCAACCCATATCTACCGAGGTCAAAATGGATAATATAGAGAAAGAAACTTCAAAATCATCCAGTCTTTGTATTGCTGGGGAAACATATCATGCCCCATATGCTCGAGTTTCTTCTATGGAAGATCCTAGTACCAGAAATAGTGAGTATGGTAAAGCAGCCCCCTCAAGTTTAGAGACTGCAGCAATTGGTGTGGAGACTGTTAAAGTACATGTGTCTAACATCGGGAACTCAACACTTGAGAAGATTCCTGAAGCAATTGAGAAGCCCCAGGTAAAGGAATCATCATCCAAAGGGTTTAGACGACTGCTTAAGTTTGGGAAAAAGAGTCATAGCTCAGCTGCTGAACGCCACACTGAATCAGATAATGTAAGCATTGACGATGAGGCAGATGAGGTTGGAACCAACAGTTCTTCTAACGAAGTTCATACTTTAAAGAACTTGATATCTCAAGATGAAACTCCCACTGCCAGCACAACTCAACAAAAGTCTTCTAGATCTTTCTCCTTGTTATCACCATTTCGAGGCAAGAACAGCGAAAAAAAGATAATGATGGCTTGA

Predicted protein sequences of Glyma10g32560

Limit To All Plant Sequences

>Glyma10g32560.2   sequence type=predicted peptide   gene model=Glyma10g32560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNTSTRLDSAVFQLTPTRTRFDLIITVNGKKEKIASGLLNPFLSHLKAAQNQMDKGGYSIVLEPPEGNTDTSWFTKGTVERFVRFVSTPEILERVYTTESEILQIEEAIAIQGNSSLGFSTVEENQVKHVESTEGRKTREDTNEERAIVLYKPDAQPPQANGSTTLEGSSKVHLLKVLETRKSALQKEQGMAFARAVAAGFDIDYIPPLMSFAECFGASRMKDACTKFRDLWRRKHETGQWLEIEAAETMSNRSDFSPLNVSGIILPSMASASHTELDSESNGKASSDVPPMDRQPSVGNHDNIQGQFPHHMFPPWPVHSPPGSVPVFSPYPVQGIPYYPAYPGNSPFMQPNYSPMEDPRLTAGQNNGRRRHSMDSRHSNTEPETQDEVDMEREGLHTGDQRKKDRRSARQKSGMVVIRNINYITKAENSGSGSYSDSASETDEDNKESVKTSKRREPGKESLKKLDSSDMEETEHGKDADGGHWQAFQNCLLRDVDEDRHAIDKDQFDQEKVHDVRRKKHIAINDPLVFNDREMHEVQGSSAIDMHSISKGLTHMPKTSNDDLLLSASAGQSGDGWSGDDVQSLEANGKRGGYRRAARDDFIISKQENQFGNAYPSSDVETSLGYSNNKLERKLFHDMNDDSYILEHRSMEVNDAGNVERNAIDMDSEIPMVQRSSDEINCINYEPDELSMLPERGAESASMSYDPALDYEMQAQAGGTLQNKNKEVLTDTKPGSKRLDKEAKSKLTPNNSDKRKTGGPIRRGKTSKPNALDEARARAESLRNYKADLQKMKKEKEEEEMKRLEALKMERQKRIAAKSSSITAQSPSQLSKKQLPTKLSPNSRKGSKFSDSEPGASSPLQRFPVRTASVGSNDSLKASKTSRLISGSHLDSNKLSRSVSSLPESKIEKDDSTTDTKASMARIRRLSEPKMSNTRQTSSVKPHGTGTISKTKAADAPESKKISAIVSHDKSKTAALPELKIRTSKASDVPQNRTAVKEKAHKLNDNKSSMNSRGTMPKKKEIGTSSNDDGDDNPVVEKTVVMLECEKPYVPPIHGSEENFDIPKKQYDNDEVTEKTETTSNYAAIRAPVSPFSMDITDKETSENQSHLQPISTEVKMDNIEKETSKSSSLCIAGETYHAPYARVSSMEDPSTRNSEYGKAAPSSLETAAIGVETVKVHVSNIGNSTLEKIPEAIEKPQVKESSSKGFRRLLKFGKKSHSSAAERHTESDNVSIDDEADEVGTNSSSNEVHTLKNLISQDETPTASTTQQKSSRSFSLLSPFRGKNSEKKIMMA*

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