Glyma10g32390 - SoyBase

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Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma10g32390

Feature Type:	gene_model
Chromosome:	Gm10
Start:	40869589
stop:	40875360
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g32390

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G04400	AT	Annotation by Michelle Graham. TAIR10: cryptochrome 2 \| chr1:1185719-1187901 REVERSE LENGTH=612	SoyBase	E_val: 0	ISS
GO:0006281	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA repair	SoyBase	N/A	ISS
GO:0006325	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin organization	SoyBase	N/A	ISS
GO:0006338	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin remodeling	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009416	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to light stimulus	SoyBase	N/A	ISS
GO:0009637	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to blue light	SoyBase	N/A	ISS
GO:0009638	GO-bp	Annotation by Michelle Graham. GO Biological Process: phototropism	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0009911	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of flower development	SoyBase	N/A	ISS
GO:0010075	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth	SoyBase	N/A	ISS
GO:0010118	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal movement	SoyBase	N/A	ISS
GO:0010617	GO-bp	Annotation by Michelle Graham. GO Biological Process: circadian regulation of calcium ion oscillation	SoyBase	N/A	ISS
GO:0042744	GO-bp	Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0009882	GO-mf	Annotation by Michelle Graham. GO Molecular Function: blue light photoreceptor activity	SoyBase	N/A	ISS
GO:0042802	GO-mf	Annotation by Michelle Graham. GO Molecular Function: identical protein binding	SoyBase	N/A	ISS
GO:0042803	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity	SoyBase	N/A	ISS
KOG0133	KOG	Deoxyribodipyrimidine photolyase/cryptochrome	JGI		ISS
PTHR11455	Panther	DNA PHOTOLYASE	JGI		ISS
PF00875	PFAM	DNA photolyase	JGI		ISS
PF03441	PFAM	FAD binding domain of DNA photolyase	JGI		ISS
UniRef100_B8K2A5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Cryptochrome 2 n=2 Tax=Glycine RepID=B8K2A5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_B8K2A5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cryptochrome 2 n=2 Tax=Glycine RepID=B8K2A5_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma10g32390

Locus	Gene Symbol	Protein Name
	CRY2a1	Cryptochrome 2a1

Expression Patterns of Glyma10g32390

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g32390

Paralog	Evidence	Comments
Glyma20g35220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g32390 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g180600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g32390

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g32390

Limit To All Plant Sequences

>Glyma10g32390.4   sequence type=transcript   gene model=Glyma10g32390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATTTTTCATGATGTTGTGGTAAAACAATTGATACATTTTGATGAAGTCGTGGAAGCTGCTGGTAGCCCCTAGTGTAGTCTAGTGTGACATGTTCACTGTTCTTATCCTTTCGTCTCTGTTGATCATACGTGTCTGTCTCCCACTATCATCAGTGCACGTACCTTGTGATCTTCCCACACACACGTGATCACACGCTAATCAGATCCTTACCCTCCCCAACACACTTCCATGATTCATTCACTGTTGCCTCCTTTTTTGCCTATATAGTTGCTTTAGGCTAAATCTTGATTTGATTTGGTGCTTGATTGTCTAATTATCTTCGGCTAAACTTTGATAGGGTTGTGAATATTAAATATCTAGCCGGTGGGTTTTTGGTATCTTACTAATTATATTATCTAGTTCAAGTTTGAGGTGTGTTTGAGGCTGGATTTGAAGAACTTTCCAAAACTTGTTTTAAGGAGAAGCTACTGAGAGAGCTGTTATATGAGGTTCGAAGCTTTGGCTATGCCATGAAAATTTTGAATTGTACAATATGGGTAGCAACAGGACTATTGTTTGGTTTAGAAGGGACCTTAGAATTGAGGACAATCCTGCATTAACTGCTGCTGCAAAGGAGGGTTCTGTACTCCCTGTGTATGTATGGTGCCCTAAAGAGGAAGGACAATTTTATCCTGGAAGAGTGTCAAGGTGGTGGCTGAAGCAGTCTCTTGCTCACTTGGATCAATCACTGAAGTCTCTTGGATCCAGACTTGTGCTCATCAAAACCCACAGTACTGCTGTGGCTCTCGTGGAATGCGTAAAGGCCATTCAAGCAACCAAAGTAGTGTTTAACCATCTGTATGATCCAGTTTCACTTGTCCGTGATCACAACATCAAAGAAAAGCTAGTGGAACAAGGCATATCTGTTCAAAGCTACAATGGAGATCTGTTGTATGAGCCATGGGAAGTAAATAGTGAGAGTGGACGTGCTTTTACTACCTTCAATGCTTTTTGGAAGAAATGCTTGCACATGCAAATGGATATTGTTTCAGTTGTTCCTCCATGGCAATTAATTCCAGCTGAAGGAAAAATTGAGGAATGTTCATTGGAGGAACTTGGTCTTGAAAATGAATCAGAAAAACCAAGTAATGCATTGCTAGGACGGGCATGGTCACCGGGTTGGAGAAATGCTGACAAGGCTTTAAGAGAATTTGTGGAGCTTCATCTACTTCACTACTCCAAGAAAAGGCTGAAGGTTGGTGGAGAGTCCACCTCACTCTTGTCCCCATATCTTCATTTTGGAGAATTAAGTGCAAGGAAAGTTTTTCAAGTGACTTGTATGAAGCAAATATTATGGACAAATGAAGGAAACAGTGCTGGTGAAGAGAGTGCAAATCTTTTCCTCAGGGCCATTGGACTTAGGGAGTACTCACGCTATCTTTGTTTCAACTTTCCCTTCACCCATGAGAGAGCACTTCTGGGGCACTTAAAGTTTTTTCCTTGGAATCCTGATCCTGATATCTTTAAGACTTGGAGACAAGGTAGGACTGGCTTTCCTTTGGTTGATGCAGGAATGAGAGAACTTTGGGCAACAGGATGGATACACAACAGAATAAGAGTAATAGTTTCCAGTTTTGCTGTGAAAATGTTGCTTCTACCCTGGAAATGGGGAATGAAATATTTCTGGGACACACTTCTGGATGCAGACCTTGAAAGTGATATCTTGGGTTGGCAATATATCTCAGGAGGCTTACCAGATGGCCATGAGCTTGAGCGCTTGGACAATCCTGAGATTCAAGGGGCTAAATTTGATCCAGAAGGTGAATATGTGAGGCAATGGCTACCTGAGTTGGCAAGAATGCCAACTGAGTGGATCCATCATCCTTGGGATGCACCACTTACTGTGCTTCGAGCAGCAGGAGTTGAGCTGGGCCAGAATTACCCAAAGCCAATCATTGATATAGATTTGGCCAGAGAAAGACTCACTGAAGCTATATTCAAGATGTGGGAATCTGAAGCAGCAGCAAAAGCTGCTGGCTCTGAACCAAGGGATGAAGTTGTTGTAGACAACTCTCACACTGTTGAAAATTTGGACACTCAAAAAGTTGTCGTCCTGGGAAAGGCTCCATGTGCTACTATTTCAGCTAATGATCAAAAGGTGCCTGCTCTTCAGGATTCCAAGAATGAACCGCCTACGCGGAAGAGGCCAAAGCACATGATAGAGGAGGGGCAGAACCAGGATCACTCTCAAAATCATAACAAAGATACTGGCTTGTCAAGCATTGACCAAGACATTTGCTCCACAGCTGATTCTTCATCATGTAAGAAGCAGTGTGCCAGTACAAGCTCATATTCATTTTCAGTTCCACAGCAGTGTTCCTCATCTTCTAATCTGAAGTGGCCATGGCAAGAGAAGATTGATATGGAGCAGAGTTCAAGCAAAGATGGAGCTATGTGAGGTTGATGTTGTTCTTGTTGACAAAACCAGTAGCAGCTGCATTGTTCATGGAAGGAAAATGGTGCCATATTTAAGTTTTGCAGTTTGTTTATAGCCTATGCTATCAATCAGTTGTGTAATAGGTTATGAAATCCTGCAAGAGGAACACGGATTACAACAATAGTGAGCATTGTATATTATGAACTTGTGCTGATGGGCTGTTCCATACACATTCTGACAATCCCGTAATTACAAACCATATAACCAAATACTCTACACATTATATTACTCTAAAATGGCTTGCATTTTATCCTTCTTACTCCAGCATTTTTTTTTGCCCAATTACACAACTTTGTTCAAAATGTTTAAACCATAAC

Coding sequences of Glyma10g32390

Limit To All Plant Sequences

>Glyma10g32390.3   sequence type=CDS   gene model=Glyma10g32390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTAGCAACAGGACTATTGTTTGGTTTAGAAGGGACCTTAGAATTGAGGACAATCCTGCATTAACTGCTGCTGCAAAGGAGGGTTCTGTACTCCCTGTGTATGTATGGTGCCCTAAAGAGGAAGGACAATTTTATCCTGGAAGAGTGTCAAGGTGGTGGCTGAAGCAGTCTCTTGCTCACTTGGATCAATCACTGAAGTCTCTTGGATCCAGACTTGTGCTCATCAAAACCCACAGTACTGCTGTGGCTCTCGTGGAATGCGTAAAGGCCATTCAAGCAACCAAAGTAGTGTTTAACCATCTGTATGATCCAGTTTCACTTGTCCGTGATCACAACATCAAAGAAAAGCTAGTGGAACAAGGCATATCTGTTCAAAGCTACAATGGAGATCTGTTGTATGAGCCATGGGAAGTAAATAGTGAGAGTGGACGTGCTTTTACTACCTTCAATGCTTTTTGGAAGAAATGCTTGCACATGCAAATGGATATTGTTTCAGTTGTTCCTCCATGGCAATTAATTCCAGCTGAAGGAAAAATTGAGGAATGTTCATTGGAGGAACTTGGTCTTGAAAATGAATCAGAAAAACCAAGTAATGCATTGCTAGGACGGGCATGGTCACCGGGTTGGAGAAATGCTGACAAGGCTTTAAGAGAATTTGTGGAGCTTCATCTACTTCACTACTCCAAGAAAAGGCTGAAGGTTGGTGGAGAGTCCACCTCACTCTTGTCCCCATATCTTCATTTTGGAGAATTAAGTGCAAGGAAAGTTTTTCAAGTGACTTGTATGAAGCAAATATTATGGACAAATGAAGGAAACAGTGCTGGTGAAGAGAGTGCAAATCTTTTCCTCAGGGCCATTGGACTTAGGGAGTACTCACGCTATCTTTGTTTCAACTTTCCCTTCACCCATGAGAGAGCACTTCTGGGGCACTTAAAGTTTTTTCCTTGGAATCCTGATCCTGATATCTTTAAGACTTGGAGACAAGGTAGGACTGGCTTTCCTTTGGTTGATGCAGGAATGAGAGAACTTTGGGCAACAGGATGGATACACAACAGAATAAGAGTAATAGTTTCCAGTTTTGCTGTGAAAATGTTGCTTCTACCCTGGAAATGGGGAATGAAATATTTCTGGGACACACTTCTGGATGCAGACCTTGAAAGTGATATCTTGGGTTGGCAATATATCTCAGGAGGCTTACCAGATGGCCATGAGCTTGAGCGCTTGGACAATCCTGAGATTCAAGGGGCTAAATTTGATCCAGAAGGTGAATATGTGAGGCAATGGCTACCTGAGTTGGCAAGAATGCCAACTGAGTGGATCCATCATCCTTGGGATGCACCACTTACTGTGCTTCGAGCAGCAGGAGTTGAGCTGGGCCAGAATTACCCAAAGCCAATCATTGATATAGATTTGGCCAGAGAAAGACTCACTGAAGCTATATTCAAGATGTGGGAATCTGAAGCAGCAGCAAAAGCTGCTGGCTCTGAACCAAGGGATGAAGTTGTTGTAGACAACTCTCACACTGTTGAAAATTTGGACACTCAAAAAGTTGTCGTCCTGGGAAAGGCTCCATGTGCTACTATTTCAGCTAATGATCAAAAGGTGCCTGCTCTTCAGGATTCCAAGAATGAACCGCCTACGCGGAAGAGGCCAAAGCACATGATAGAGGAGGGGCAGAACCAGGATCACTCTCAAAATCATAACAAAGATACTGGCTTGTCAAGCATTGACCAAGACATTTGCTCCACAGCTGATTCTTCATCATGTAAGAAGCAGTGTGCCAGTACAAGCTCATATTCATTTTCAGTTCCACAGCAGTGTTCCTCATCTTCTAATCTGAAGTGGCCATGGCAAGAGAAGATTGATATGGAGCAGAGTTCAAGCAAAGATGGAGCTATGTGA

>Glyma10g32390.4   sequence type=CDS   gene model=Glyma10g32390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTAGCAACAGGACTATTGTTTGGTTTAGAAGGGACCTTAGAATTGAGGACAATCCTGCATTAACTGCTGCTGCAAAGGAGGGTTCTGTACTCCCTGTGTATGTATGGTGCCCTAAAGAGGAAGGACAATTTTATCCTGGAAGAGTGTCAAGGTGGTGGCTGAAGCAGTCTCTTGCTCACTTGGATCAATCACTGAAGTCTCTTGGATCCAGACTTGTGCTCATCAAAACCCACAGTACTGCTGTGGCTCTCGTGGAATGCGTAAAGGCCATTCAAGCAACCAAAGTAGTGTTTAACCATCTGTATGATCCAGTTTCACTTGTCCGTGATCACAACATCAAAGAAAAGCTAGTGGAACAAGGCATATCTGTTCAAAGCTACAATGGAGATCTGTTGTATGAGCCATGGGAAGTAAATAGTGAGAGTGGACGTGCTTTTACTACCTTCAATGCTTTTTGGAAGAAATGCTTGCACATGCAAATGGATATTGTTTCAGTTGTTCCTCCATGGCAATTAATTCCAGCTGAAGGAAAAATTGAGGAATGTTCATTGGAGGAACTTGGTCTTGAAAATGAATCAGAAAAACCAAGTAATGCATTGCTAGGACGGGCATGGTCACCGGGTTGGAGAAATGCTGACAAGGCTTTAAGAGAATTTGTGGAGCTTCATCTACTTCACTACTCCAAGAAAAGGCTGAAGGTTGGTGGAGAGTCCACCTCACTCTTGTCCCCATATCTTCATTTTGGAGAATTAAGTGCAAGGAAAGTTTTTCAAGTGACTTGTATGAAGCAAATATTATGGACAAATGAAGGAAACAGTGCTGGTGAAGAGAGTGCAAATCTTTTCCTCAGGGCCATTGGACTTAGGGAGTACTCACGCTATCTTTGTTTCAACTTTCCCTTCACCCATGAGAGAGCACTTCTGGGGCACTTAAAGTTTTTTCCTTGGAATCCTGATCCTGATATCTTTAAGACTTGGAGACAAGGTAGGACTGGCTTTCCTTTGGTTGATGCAGGAATGAGAGAACTTTGGGCAACAGGATGGATACACAACAGAATAAGAGTAATAGTTTCCAGTTTTGCTGTGAAAATGTTGCTTCTACCCTGGAAATGGGGAATGAAATATTTCTGGGACACACTTCTGGATGCAGACCTTGAAAGTGATATCTTGGGTTGGCAATATATCTCAGGAGGCTTACCAGATGGCCATGAGCTTGAGCGCTTGGACAATCCTGAGATTCAAGGGGCTAAATTTGATCCAGAAGGTGAATATGTGAGGCAATGGCTACCTGAGTTGGCAAGAATGCCAACTGAGTGGATCCATCATCCTTGGGATGCACCACTTACTGTGCTTCGAGCAGCAGGAGTTGAGCTGGGCCAGAATTACCCAAAGCCAATCATTGATATAGATTTGGCCAGAGAAAGACTCACTGAAGCTATATTCAAGATGTGGGAATCTGAAGCAGCAGCAAAAGCTGCTGGCTCTGAACCAAGGGATGAAGTTGTTGTAGACAACTCTCACACTGTTGAAAATTTGGACACTCAAAAAGTTGTCGTCCTGGGAAAGGCTCCATGTGCTACTATTTCAGCTAATGATCAAAAGGTGCCTGCTCTTCAGGATTCCAAGAATGAACCGCCTACGCGGAAGAGGCCAAAGCACATGATAGAGGAGGGGCAGAACCAGGATCACTCTCAAAATCATAACAAAGATACTGGCTTGTCAAGCATTGACCAAGACATTTGCTCCACAGCTGATTCTTCATCATGTAAGAAGCAGTGTGCCAGTACAAGCTCATATTCATTTTCAGTTCCACAGCAGTGTTCCTCATCTTCTAATCTGAAGTGGCCATGGCAAGAGAAGATTGATATGGAGCAGAGTTCAAGCAAAGATGGAGCTATGTGA

Predicted protein sequences of Glyma10g32390

Limit To All Plant Sequences

>Glyma10g32390.3   sequence type=predicted peptide   gene model=Glyma10g32390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSNRTIVWFRRDLRIEDNPALTAAAKEGSVLPVYVWCPKEEGQFYPGRVSRWWLKQSLAHLDQSLKSLGSRLVLIKTHSTAVALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEKLVEQGISVQSYNGDLLYEPWEVNSESGRAFTTFNAFWKKCLHMQMDIVSVVPPWQLIPAEGKIEECSLEELGLENESEKPSNALLGRAWSPGWRNADKALREFVELHLLHYSKKRLKVGGESTSLLSPYLHFGELSARKVFQVTCMKQILWTNEGNSAGEESANLFLRAIGLREYSRYLCFNFPFTHERALLGHLKFFPWNPDPDIFKTWRQGRTGFPLVDAGMRELWATGWIHNRIRVIVSSFAVKMLLLPWKWGMKYFWDTLLDADLESDILGWQYISGGLPDGHELERLDNPEIQGAKFDPEGEYVRQWLPELARMPTEWIHHPWDAPLTVLRAAGVELGQNYPKPIIDIDLARERLTEAIFKMWESEAAAKAAGSEPRDEVVVDNSHTVENLDTQKVVVLGKAPCATISANDQKVPALQDSKNEPPTRKRPKHMIEEGQNQDHSQNHNKDTGLSSIDQDICSTADSSSCKKQCASTSSYSFSVPQQCSSSSNLKWPWQEKIDMEQSSSKDGAM*

>Glyma10g32390.4   sequence type=predicted peptide   gene model=Glyma10g32390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSNRTIVWFRRDLRIEDNPALTAAAKEGSVLPVYVWCPKEEGQFYPGRVSRWWLKQSLAHLDQSLKSLGSRLVLIKTHSTAVALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEKLVEQGISVQSYNGDLLYEPWEVNSESGRAFTTFNAFWKKCLHMQMDIVSVVPPWQLIPAEGKIEECSLEELGLENESEKPSNALLGRAWSPGWRNADKALREFVELHLLHYSKKRLKVGGESTSLLSPYLHFGELSARKVFQVTCMKQILWTNEGNSAGEESANLFLRAIGLREYSRYLCFNFPFTHERALLGHLKFFPWNPDPDIFKTWRQGRTGFPLVDAGMRELWATGWIHNRIRVIVSSFAVKMLLLPWKWGMKYFWDTLLDADLESDILGWQYISGGLPDGHELERLDNPEIQGAKFDPEGEYVRQWLPELARMPTEWIHHPWDAPLTVLRAAGVELGQNYPKPIIDIDLARERLTEAIFKMWESEAAAKAAGSEPRDEVVVDNSHTVENLDTQKVVVLGKAPCATISANDQKVPALQDSKNEPPTRKRPKHMIEEGQNQDHSQNHNKDTGLSSIDQDICSTADSSSCKKQCASTSSYSFSVPQQCSSSSNLKWPWQEKIDMEQSSSKDGAM*

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