Glyma10g32340 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma10g32340

Feature Type:	gene_model
Chromosome:	Gm10
Start:	40824254
stop:	40827242
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g32340

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G14550	AT	Annotation by Michelle Graham. TAIR10: indole-3-acetic acid inducible 14 \| chr4:8348521-8349923 REVERSE LENGTH=228	SoyBase	E_val: 2.00E-122	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0009741	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to brassinosteroid stimulus	SoyBase	N/A	ISS
GO:0010102	GO-bp	Annotation by Michelle Graham. GO Biological Process: lateral root morphogenesis	SoyBase	N/A	ISS
GO:0010583	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone	SoyBase	N/A	ISS
GO:0045892	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0048527	GO-bp	Annotation by Michelle Graham. GO Biological Process: lateral root development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PF02309	PFAM	AUX/IAA family	JGI		ISS
UniRef100_D2DGW4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Aux/IAA protein n=1 Tax=Glycine max RepID=D2DGW4_SOYBN	SoyBase	E_val: 5.00E-175	ISS
UniRef100_D2DGW4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Aux/IAA protein n=1 Tax=Glycine max RepID=D2DGW4_SOYBN	SoyBase	E_val: 5.00E-175	ISS

Expression Patterns of Glyma10g32340

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g32340

Paralog	Evidence	Comments
Glyma20g35270	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g32340 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g180100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g32340

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g32340

Limit To All Plant Sequences

>Glyma10g32340.1   sequence type=CDS   gene model=Glyma10g32340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAACTATGCTGACAAATGAGCATGGTCTGAGTTTGAACCTCAAGGAGACTGAGCTTTGCCTCGGTTTGCCTGGCGGGGGCTCTGAAGTGGAAACTCCAAGGGCCACTGGGAAGAGAGGGTTCTCTGAGACCGTTGATCTGAAGCTTAATCTTCAGACCAAGGAAGATCTGAATGAGAATCTGAAGAATGTCTCAAAGGAGAAGACTCTCCTTAAAGATCCTGCTAAGCCGCCGGCTAAGGCTCAAGTGGTTGGTTGGCCACCAGTGAGATCATACAGGAAGAACATGATGGCAGTACAGAAGGTTAGCAATGAGGAAGTAGCTGAGAAGACAACAAGCAGCACTATTGCTAATTCTGGGGCGTTTGTCAAGGTTTCCATGGATGGAGCACCTTACCTTCGCAAGGTGGACCTCACAATGTACAAAAGCTACAAAGACTTATCTGATGCCTTGGCCAAAATGTTCAGCTCCTTCACCATGGGTAACTATGGGGCCCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGATGGATCTTCTTAACAGCTCTGAGTATGTGCCAACCTATGAAGATAAGGATGGTGACTGGATGCTCGTGGGTGATGTCCCATGGGAGATGTTTGTTGGGTCATGCAAGCGCCTGCGAATAATGAAGGGATCAGAAGCGATTGGCCTTGCGCCAAGAGCAATGGAAAAATGCAAAAGCAGAAGCTGA

Predicted protein sequences of Glyma10g32340

Limit To All Plant Sequences

>Glyma10g32340.1   sequence type=predicted peptide   gene model=Glyma10g32340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTTMLTNEHGLSLNLKETELCLGLPGGGSEVETPRATGKRGFSETVDLKLNLQTKEDLNENLKNVSKEKTLLKDPAKPPAKAQVVGWPPVRSYRKNMMAVQKVSNEEVAEKTTSSTIANSGAFVKVSMDGAPYLRKVDLTMYKSYKDLSDALAKMFSSFTMGNYGAQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVGSCKRLRIMKGSEAIGLAPRAMEKCKSRS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain