Glyma10g32330 - SoyBase

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Report for Sequence Feature Glyma10g32330

Feature Type:	gene_model
Chromosome:	Gm10
Start:	40804058
stop:	40805349
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g32330

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G04240	AT	Annotation by Michelle Graham. TAIR10: AUX/IAA transcriptional regulator family protein \| chr1:1128564-1129319 REVERSE LENGTH=189	SoyBase	E_val: 1.00E-67	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0009741	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to brassinosteroid stimulus	SoyBase	N/A	ISS
GO:0010583	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone	SoyBase	N/A	ISS
GO:0048527	GO-bp	Annotation by Michelle Graham. GO Biological Process: lateral root development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0046983	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity	SoyBase	N/A	ISS
PF02309	PFAM	AUX/IAA family	JGI		ISS
UniRef100_I1NIA4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NIA4_SOYBN	SoyBase	E_val: 6.00E-81	ISS
UniRef100_P32294	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Auxin-induced protein 22B n=1 Tax=Vigna radiata var. radiata RepID=AX22B_VIGRR	SoyBase	E_val: 1.00E-75	ISS

Expression Patterns of Glyma10g32330

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g32330

Paralog	Evidence	Comments
Glyma20g35280	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g32330 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g180000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g32330

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g32330

Limit To All Plant Sequences

>Glyma10g32330.3   sequence type=transcript   gene model=Glyma10g32330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCAATAATTAACATATTATTATTAAGGGTTAAGACTTAAAGGTCTTTAATTTATTTATCTCATGTTTTTTGTTGATGAGTGGGGATGCATGCTTTGAAGTTCTTCGTATTTTTATGAATATTTTGAGTTTGGTGATTTATTGAATGTGTTGACATGTATTACAGGGCTAAGATAGTGGGGTGGCCACCAATCAGATCCTACAGAAAGAACAGCCTTCAGGAGAATGATGGTGCTGGGATTTATGTGAAAGTGAGCATGGATGGAGCTCCTTACCTCAGAAAGATAGACTTGAAGGTCTATGGAGGCTACACACAACTCCTCAAAGCTCTAGAAAACATGTTCAAGTTGACCATAGGTGAGTATTCTGAAAAAGAAGGTTATAAGGGATCTGACTATGCACCTACATATGAAGACAAAGATGGTGACTGGATGTTAGTTGGAGATGTTCCATGGGAGTAAGTGTTTTACATTACATGACATCTCTCTCTTTCCTTTTCTTTTCTTTCTGATCCTTCTGCTTTTGTTTGTGTCTCATCATCATGAGTTGATCTTAAT

Coding sequences of Glyma10g32330

Limit To All Plant Sequences

>Glyma10g32330.2   sequence type=CDS   gene model=Glyma10g32330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATTACAGGGCTAAGATAGTGGGGTGGCCACCAATCAGATCCTACAGAAAGAACAGCCTTCAGGAGAATGATGGTGCTGGGATTTATGTGAAAGTGAGCATGGATGGAGCTCCTTACCTCAGAAAGATAGACTTGAAGGTCTATGGAGGCTACACACAACTCCTCAAAGCTCTAGAAAACATGTTCAAGTTGACCATAGGTGAGTATTCTGAAAAAGAAGGTTATAAGGGATCTGACTATGCACCTACATATGAAGACAAAGATGGTGACTGGATGTTAGTTGGAGATGTTCCATGGGACATGTTTGTGACTTCTTGCAAAAGGCTAAGAATCATGAAAGGATCAGAGGCAAGGGGTTTGGGTTGTGCTGTATGA

>Glyma10g32330.3   sequence type=CDS   gene model=Glyma10g32330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATTACAGGGCTAAGATAGTGGGGTGGCCACCAATCAGATCCTACAGAAAGAACAGCCTTCAGGAGAATGATGGTGCTGGGATTTATGTGAAAGTGAGCATGGATGGAGCTCCTTACCTCAGAAAGATAGACTTGAAGGTCTATGGAGGCTACACACAACTCCTCAAAGCTCTAGAAAACATGTTCAAGTTGACCATAGGTGAGTATTCTGAAAAAGAAGGTTATAAGGGATCTGACTATGCACCTACATATGAAGACAAAGATGGTGACTGGATGTTAGTTGGAGATGTTCCATGGGAGTAA

Predicted protein sequences of Glyma10g32330

Limit To All Plant Sequences

>Glyma10g32330.2   sequence type=predicted peptide   gene model=Glyma10g32330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYYRAKIVGWPPIRSYRKNSLQENDGAGIYVKVSMDGAPYLRKIDLKVYGGYTQLLKALENMFKLTIGEYSEKEGYKGSDYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGSEARGLGCAV*

>Glyma10g32330.3   sequence type=predicted peptide   gene model=Glyma10g32330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYYRAKIVGWPPIRSYRKNSLQENDGAGIYVKVSMDGAPYLRKIDLKVYGGYTQLLKALENMFKLTIGEYSEKEGYKGSDYAPTYEDKDGDWMLVGDVPWE*

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