SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma10g32190

Feature Type:gene_model
Chromosome:Gm10
Start:40635840
stop:40638465
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g32190
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G22930AT Annotation by Michelle Graham. TAIR10: calmodulin-like 11 | chr3:8124286-8125835 REVERSE LENGTH=173 SoyBaseE_val: 2.00E-85ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0030048GO-bp Annotation by Michelle Graham. GO Biological Process: actin filament-based movement SoyBaseN/AISS
GO:0051645GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi localization SoyBaseN/AISS
GO:0051646GO-bp Annotation by Michelle Graham. GO Biological Process: mitochondrion localization SoyBaseN/AISS
GO:0060151GO-bp Annotation by Michelle Graham. GO Biological Process: peroxisome localization SoyBaseN/AISS
GO:0005509GO-mf Annotation by Michelle Graham. GO Molecular Function: calcium ion binding SoyBaseN/AISS
KOG0027 KOG Calmodulin and related proteins (EF-Hand superfamily) JGI ISS
PTHR23050Panther CALCIUM BINDING PROTEIN JGI ISS
PTHR23050:SF20Panther CALMODULIN JGI ISS
PF00036PFAM EF hand JGI ISS
UniRef100_Q39890UniRef Annotation by Michelle Graham. Best UniRef hit: Calmodulin n=1 Tax=Glycine max RepID=Q39890_SOYBN SoyBaseE_val: 4.00E-101ISS
UniRef100_Q39890UniRef Annotation by Michelle Graham. Most informative UniRef hit: Calmodulin n=1 Tax=Glycine max RepID=Q39890_SOYBN SoyBaseE_val: 4.00E-101ISS

Expression Patterns of Glyma10g32190
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g32190
ParalogEvidenceComments
Glyma20g35440 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g32190 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g178400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g32190
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g32190
>Glyma10g32190.1   sequence type=CDS   gene model=Glyma10g32190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGATATCCTGAGTGAAGAACAGATTGTTGATTTTAAAGAGGCCTTTGGCTTGTTTGACAAAGATGGAGATGGTTGCATTACTGTGGAAGAACTTGCCACTGTCATTCGGTCATTGGATCAGAACCCCACTGAAGAAGAGCTCCAAGATATGATAAGCGAAGTCGATGCAGATGGCAATGGAACCATTGAATTTGACGAGTTCTTGAGCTTGATGGCCAAGAAAGTCAAAGACACTGATGCAGAGGAGGAGCTCAAAGAAGCTTTCAAGGTTTTTGACAAAGATCAAAATGGCTACATATCAGCTAGTGAGTTGAGACACGTAATGATCAATCTAGGGGAAAAACTAACCGATGAAGAGGTGGAGCAGATGATTAAAGAAGCAGATTTGGACGGTGATGGCCAAGTTAACTATGAGGAATTCGTCAAGATGATGATGACCGTTCGATGA
Predicted protein sequences of Glyma10g32190
>Glyma10g32190.1   sequence type=predicted peptide   gene model=Glyma10g32190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADILSEEQIVDFKEAFGLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMISEVDADGNGTIEFDEFLSLMAKKVKDTDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEFVKMMMTVR*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo