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Report for Sequence Feature Glyma10g31730

Feature Type:gene_model
Chromosome:Gm10
Start:40226339
stop:40227097
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g31730
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G36970AT Annotation by Michelle Graham. TAIR10: NDR1/HIN1-like 25 | chr5:14604367-14605194 REVERSE LENGTH=248 SoyBaseE_val: 1.00E-86ISS
GO:0009814GO-bp Annotation by Michelle Graham. GO Biological Process: defense response, incompatible interaction SoyBaseN/AISS
GO:0009863GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF03168PFAM Late embryogenesis abundant protein JGI ISS
UniRef100_F4K5V1UniRef Annotation by Michelle Graham. Most informative UniRef hit: NDR1/HIN1-like 25 n=1 Tax=Arabidopsis thaliana RepID=F4K5V1_ARATH SoyBaseE_val: 6.00E-84ISS
UniRef100_I1LBZ4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LBZ4_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma10g31730
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g31730
ParalogEvidenceComments
Glyma20g35880 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g31730 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g174100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g31730
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g31730
>Glyma10g31730.1   sequence type=CDS   gene model=Glyma10g31730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGATCATCAGAGACTGAGGATCCACCCTATGGAGGGGGAAGCACCACCGCCCCCAACAACTCCATTGGTCCCTCCAGGCTCATCAAGATCAGAAAAGGGTGTTCCTTTGCACCATCCTCCACCTCTACCACGTGCTATGCCAGCAGCATACCCTACACCACACAAAAGAAGCTCAAGCTGTTGCTGCAAGTGCATATGCTGGACAATAATCTTGGTTGTTCTCCTCCTCATTATCTTTGCAGCAAGTGTTGGAATCCTTTATCTAGTCTTCCAACCAAAGCTTCCTGATTACTCAGTTGACACTCTCAGGATAAGTGATCTGAGGCTTAACTTTGACATGAGCCTCTATGCAAAGTTTGATGTGAAGATCACAGCAACCAACCCAAACAAGAAGATTGGCATCTACTATGAAAAGGGTGGAAAGTTGAGTGTGTGGTACACAAACACAAGGCTCTGTGAAGGGTCACTGCCACAATTCTACCAAGGTCATGAGAACAAAACAGTGCTCAATGTGTCCTTGAGTGGTCAAGTGCAGTCTGGAAGCACCCTAATGAATGCACTGCAGCAGCAACAGCAGACAGGGCGCATTCCATTGGATCTCAAGGTGCATGCACCAATAGCCATCAAACTTGGGAGGTTGAAGCTGATGAAGGTGAGAGTGTTGGGAGAATGCCTTTTGGTGGTGGATAGCTTGTCATCTAATAATCTCATAAGCATCAAGGCTAGCAACTGCAAGTTTAGATTGAAACTTTGA
Predicted protein sequences of Glyma10g31730
>Glyma10g31730.1   sequence type=predicted peptide   gene model=Glyma10g31730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADHQRLRIHPMEGEAPPPPTTPLVPPGSSRSEKGVPLHHPPPLPRAMPAAYPTPHKRSSSCCCKCICWTIILVVLLLIIFAASVGILYLVFQPKLPDYSVDTLRISDLRLNFDMSLYAKFDVKITATNPNKKIGIYYEKGGKLSVWYTNTRLCEGSLPQFYQGHENKTVLNVSLSGQVQSGSTLMNALQQQQQTGRIPLDLKVHAPIAIKLGRLKLMKVRVLGECLLVVDSLSSNNLISIKASNCKFRLKL*






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