Glyma10g31700 - SoyBase

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Report for Sequence Feature Glyma10g31700

Feature Type:	gene_model
Chromosome:	Gm10
Start:	40190913
stop:	40205863
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g31700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G24060	AT	Annotation by Michelle Graham. TAIR10: Dof-type zinc finger DNA-binding family protein \| chr4:12503970-12505417 FORWARD LENGTH=342	SoyBase	E_val: 7.00E-52	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PF02701	PFAM	Dof domain, zinc finger	JGI		ISS
UniRef100_B9GXU9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F-box family protein n=1 Tax=Populus trichocarpa RepID=B9GXU9_POPTR	SoyBase	E_val: 1.00E-99	ISS
UniRef100_I1LBZ0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LBZ0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g31700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g31700

Paralog	Evidence	Comments
Glyma20g35910	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g31700 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g173700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g31700

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g31700

Limit To All Plant Sequences

>Glyma10g31700.1   sequence type=CDS   gene model=Glyma10g31700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGTGAAACCAATAGAAGATATAGTGGTGACAAATACTACATGTACAAAGGCTGCAGTAGGTTCTGTAGAAAGGAAGCCAAGGCCACAGAAAGAACAAGCTATTAATTGTCCAAGGTGTCATTCAATTAACACCAAGTTCTGCTACTACAACAACTACAGCCTCACACAGCCTAGGTATTTCTGCAAGACTTGTAGAAGGTATTGGACTGAAGGTGGGACCCTCAGGAACATCCCTGTAGGAGGTGGCTCTAGGAAGAACAAGAGATCTTCAGCTTCTTGTAGTAACAATAGTCATCACAATGACAATAATTCAACCAATAAGAAGCTTTCTGCAGATCTGGTCATCACACCTCCAACTTTGTCACACACTACTCAAAACCCTAAGAGCAATGATAATAGTATTATTCATCAAGGCCAAGATCTCAATTTGGCTTTCCCATCCACCACCACCACCACCTCAGATTTCAGAAAAATCTCTGAATTGGTCCAACAAAATAACAACAACAATAGTAGCAACAACAGCATGTCAGCTTCTTCTTCAACCACAACTACAACTACTTCCACTTCTCATCACCTTTCTGCATTAGAGCTTCTTACTGGGATCACTTCTAGTTCCAGTACTGGTTTGAGTACTTCTTTCATGCCTATTCCAGTTCCATCTAATCCAAATTCTATCTACACTTGTGGATTTCCTCTGCAAGATTTCAAGCCAGGAACCTTGAATTTCTCTTTAGATGGGATTGGAAAGGGGTACACAAGCCTTCAGAATGTTCATGGTGGGAGGCTCTTGTTTCCATTTGAGGACCTAAAACAGGTTTCTAGCACCACCACAATGAATCAGACGCAACAAGGGGATTCAACTGGGTATTGGACTGGAATGTTAGGCGGAGGATCATGGTTTAATTGGAGCTGTCAGTTGTATATAGCAAGATCCGCGTTAAAATGTGTTATGATCATGATTCATGAATAG

Predicted protein sequences of Glyma10g31700

Limit To All Plant Sequences

>Glyma10g31700.1   sequence type=predicted peptide   gene model=Glyma10g31700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVVKPIEDIVVTNTTCTKAAVGSVERKPRPQKEQAINCPRCHSINTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNIPVGGGSRKNKRSSASCSNNSHHNDNNSTNKKLSADLVITPPTLSHTTQNPKSNDNSIIHQGQDLNLAFPSTTTTTSDFRKISELVQQNNNNNSSNNSMSASSSTTTTTTSTSHHLSALELLTGITSSSSTGLSTSFMPIPVPSNPNSIYTCGFPLQDFKPGTLNFSLDGIGKGYTSLQNVHGGRLLFPFEDLKQVSSTTTMNQTQQGDSTGYWTGMLGGGSWFNWSCQLYIARSALKCVMIMIHE*

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