Glyma10g31680 - SoyBase

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Report for Sequence Feature Glyma10g31680

Feature Type:	gene_model
Chromosome:	Gm10
Start:	40161416
stop:	40164201
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g31680

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G00910	AT	Annotation by Michelle Graham. TAIR10: Aluminium activated malate transporter family protein \| chr4:389370-391287 REVERSE LENGTH=497	SoyBase	E_val: 2.00E-159	ISS
GO:0010044	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to aluminum ion	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG4711	KOG	Predicted membrane protein	JGI		ISS
PF11744	PFAM	Aluminium activated malate transporter	JGI		ISS
UniRef100_O23086	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Aluminum-activated malate transporter 10 n=1 Tax=Arabidopsis thaliana RepID=ALMTA_ARATH	SoyBase	E_val: 8.00E-157	ISS
UniRef100_UPI000233D211	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233D211 related cluster n=1 Tax=unknown RepID=UPI000233D211	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g31680

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g31680

Paralog	Evidence	Comments
Glyma20g35930	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g31680 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g173400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g31680

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g31680

Limit To All Plant Sequences

>Glyma10g31680.2   sequence type=CDS   gene model=Glyma10g31680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCGTGGCAACGATATGGCGAAAGAAGTAGAATGGAGGATCAAGGTAGAAGAAGACGATGACACACTGCAGAAAACAATAGTTGGTTGCATGTGGGCAGTTACAGCAGGTCTGGCTTTGAAGTTGTGCAAGTTTGTGAAGAAAGCATGGGAGGTTGGGGTGAATGACCCAAGAAAATTCATCCATTGCTTGAAAGTAGGGATTGCACTTTCAGCAGTTTCTCTCTTCTACTATTGGAAGCCTTTGTATGATGGAGTTGGAGGAAATGCTATGTGGGCTGTCATGACTGTGGTTGTAGTTTTTGAGTACACAGCCGGTGCAACTATATGTAAAACTGTTAACAGAATGTGTGGAACTTCCCTTGCTGGATTTCTAGGCATTGGTGTACATTGGGTAGCAAGTAGGGCAGGAGAGCAATGGGAACCCGTAATTGCTGGAGTCTCTGTCTTTCTTTTAGCTTCTGCAGCAACATTCTCCAGATTCATCCCCTCCTTAAAGGCTCGTTTTGATTATGGTATTTTGATATTCATCCTCACATTCAGCTTGGTGTCAATATCGGGTTACCGGGTTGATGAATTGTTGGTCATGGCACAGTACAGAGTGTGCACGATTATAATTGGTAGCATAATGTGCATAATTGTCAGCGTTATCATTCGCCCCATTTGGGCTGGTTTCGAACTCTTTGTTTTAGTCACAGGGAACCTCGACAAACTGGCCAACTCCTTGCGATGTTGTGTGGTTCAGTACTTCGGTGGTAGTGAAGCCTCAGAAGCAGAAAGTGATGAGGTGTCTGATAAAAAATTGCTAGGCTACAAGTGCGTGCTAAGTTCCAAAGCAACAGAAGAAACTATGGCAAATTTTGCTAGATGGGAGCCTGCCCATGGCCGCTTCAACTTCCGTCACCCATGGAGGCAATATGTTAAAATTGGGGCATCGATGCGTAGTTGTGCTTCCTGTTTAGATGCTCTTATTGGATGCATAAATTCAGACAACCAGGCTTCGGATGACATGAAGAAGAATATGAGCAGCATCTCCATGAAAGTGGGTGCCAATTGTGCAAGTGTCATAAGAGAGCTAGCAACTACAATAAGGAAAATGAAAAAATCATCTAAACTTGATATTTTGGTTACACAGATGAATAGTGCTGCACAAGAGCTCCGAAGTTTGTTAAATTCTTGTCCATACTTGGTTAACCCACCACATAATTCCAAACGTAGTACACGAACAGAAACAGCTTCACCTGATGATCTAGCTCCAAAAATAGAAATCCCACTTATGGAAATTATTCAGGTTGTAACTGTAGCTTCTTTGCTCATTGAAATTGTGGCTCGTGTGGAAGACATTGTGGAAAATGTTGAAGAACTATCAGATTTGGCTAATTTCCAACCAGAAATGAATGTCAAATCCAAACAACATACATCGGACAGCAAGGTCTCCCCTGACCAACAGAATGATGGGGAACCCGTTAGAACACTCCAAATGGTCTAA

Predicted protein sequences of Glyma10g31680

Limit To All Plant Sequences

>Glyma10g31680.2   sequence type=predicted peptide   gene model=Glyma10g31680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MARGNDMAKEVEWRIKVEEDDDTLQKTIVGCMWAVTAGLALKLCKFVKKAWEVGVNDPRKFIHCLKVGIALSAVSLFYYWKPLYDGVGGNAMWAVMTVVVVFEYTAGATICKTVNRMCGTSLAGFLGIGVHWVASRAGEQWEPVIAGVSVFLLASAATFSRFIPSLKARFDYGILIFILTFSLVSISGYRVDELLVMAQYRVCTIIIGSIMCIIVSVIIRPIWAGFELFVLVTGNLDKLANSLRCCVVQYFGGSEASEAESDEVSDKKLLGYKCVLSSKATEETMANFARWEPAHGRFNFRHPWRQYVKIGASMRSCASCLDALIGCINSDNQASDDMKKNMSSISMKVGANCASVIRELATTIRKMKKSSKLDILVTQMNSAAQELRSLLNSCPYLVNPPHNSKRSTRTETASPDDLAPKIEIPLMEIIQVVTVASLLIEIVARVEDIVENVEELSDLANFQPEMNVKSKQHTSDSKVSPDQQNDGEPVRTLQMV*

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