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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G32810 | AT | Annotation by Michelle Graham. TAIR10: RING/FYVE/PHD zinc finger superfamily protein | chr1:11881810-11885843 FORWARD LENGTH=1068 | SoyBase | E_val: 3.00E-155 | ISS |
| GO:0006396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA processing | SoyBase | N/A | ISS |
| GO:0009410 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to xenobiotic stimulus | SoyBase | N/A | ISS |
| GO:0010413 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process | SoyBase | N/A | ISS |
| GO:0022402 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle process | SoyBase | N/A | ISS |
| GO:0045492 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process | SoyBase | N/A | ISS |
| GO:0048522 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of cellular process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR14571 | Panther | FYVE/PHD ZINC FINGER-CONTAINING PROTEIN JUNE1-RELATED | JGI | ISS | |
| PTHR14571:SF6 | Panther | PHD FINGER FAMILY PROTEIN | JGI | ISS | |
| UniRef100_Q9MAQ7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Location of EST 206I21T7, gb|N37185 n=2 Tax=Arabidopsis thaliana RepID=Q9MAQ7_ARATH | SoyBase | E_val: 1.00E-152 | ISS |
| UniRef100_UPI000233D20F | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D20F related cluster n=1 Tax=unknown RepID=UPI000233D20F | SoyBase | E_val: 0 | ISS |
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Glyma10g31570 not represented in the dataset |
Glyma10g31570 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g36010 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g172500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g31570.2 sequence type=CDS gene model=Glyma10g31570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAGGGGGGCGATCGCACCGCCCTCAGAGCTCTGACCCGCCGGACGAGTGGGTGGACGGGTCCTGGACGGTGGACTGCATCTGCGGCGTCACCTTCGACGACGGCGAGGAGATGGTCAAATGCGACGAGTGCGGCGTGTGGGTCCACACGCGCTGCTCTCGCTACGTCAAGGGCGACGACACCTTCGCATGTGACAAGTGCAAGGCCAGGCACAACAGCAACAGCAACAACACCACCACCACCACCACCAACACCACCAACCCCATGGAGACCGAGGTGGCGCAGTTCCTCGTGGAACTCCCCACAAAAACCATTTCCATGGACAACAAAAAAGCCCTCCCCTCCAGGCCCAGGCTCTGGACCGATAAGCCCATCGAGGAGCGGGTCCATGTTCAGGGCCCACCGGGCGGAGACCCTTCCATCTTCGCTGGCCAAAGCGCCTCCTCGATTTTCACGCCCCAGCTCTGGAAGGCATGCGGGTATGTCCCTAAGAAGTTCAGTTTTAAGTACAATGAGTTCCCTTTCTTGAATAATGATAACGATAACGAGGGCGGGCCAGCAAAAGATGATAGTAACGATAATGGGGCTGGTGCTGGGGCTCTTGTTTCTCTGTCCAAAGAGGGTAACAACATTGCTTCTGCTGCTCCTGTGTTGAACACTTCTTCCCCTGTTGGGGCTTCGGTTGAAACGAGATCTGGCCAGGGCAAGGGCGCGGACACGGGCAAGTTTGGGAGCGAGGACGTGCCACCACGTGTCCCCAGTGACGTCAAGAAGGAGAGGACTCTGCTGAGGCCACCTGTTGTTCATAACAGTCAGCGTAGCAAAGGGGATTTCGTCGGGAATTCGAGTTCCAAGGAGAGGAGTGGGAAGAAACGCCTTAGGACTTCTGACAGGGAGGTAGATCCCAGGAAGAAAACGCTGCATTCCTCCAAAACAGTGGTTACGCCCACCGCTGATGGAAAGCAATTGGAATTTTGTGAGGATAGAGGATCAAAGATTTTCAAGGCTGACACTCGGAGCATAAAGAACAAAAACTTAAAAGACATGGTGGTTCAAGAACATGTTTCTGATGATCATGTAGCTGTGGATACTACCATGGAGGAGCCAAATAACAACTTAACAACTACCGAGGACTCCTCAGAACCATTATATCCTGACATGACTAAACATGGTGTTTCTGTTGGAGATGTTGTAGCAGAAGAGAAGGCTAGCCATAAAACTCCTACTTTGGTTGAGATGTCTTCCAAGACTGATGATGCTGTTACATCATCTTTAAAGCAGAACTATGTTGGAAATGCTTCAGTTAAAGAAAAGGATGGAGATTGCTTGGTAGCTGATAACGCAGACGATACTTTAGTAGTAAGAAGTGCAGCAAGTCCTCGCACAGAAGGTCATTGTGGTTCTGCACCAGAACTTGTGGATAACCAAGTTTCTCAAGATCTTGACCGTAACATGCGTTCTAGCTCTACAAAATGCAAAGTTAAGATGAGGAGAGATGATGTTGATAATTTTAGGAAGCCCTCAAATTTTCATTCTTCTCCTATGAGTGATCTAAAAAACAATGATAAACCTTCTGACCACACTTCTGATATTGTTAAAGTGAATGATGCTCCAGTTCCCAGTTTACCATCATGTGAAAGTAAGGTGGGTGGTTTTGATATTTCATCAGAACCAATACCTGCTGATCATACCAATAAACCCAATGAATTATCTGGTGATTTTTGTCAAAGAAAACAGGAACCGGTGGGGTCTGAAGGTTCCTTCGAAACACAAAAGGGATTTACAGAAACAAAAGACAGTTTGGATGCTGCTAAAGATCCATCAAAATCCGAAGCAATTGGATGTCTGCCTAAAGTTGGAAAGTCATCTCCAACTTCATCAACCATGAACTCCAAATCATTGGGTCATGACATCAAATCTGAAGATACTGAAATCCCTAATTCTTTTACGAAGCATGGAGTGATGGCTGATAGTAACATTCACACAAAGAATGAAAATTGTCCAAGTGATGCTGCCAGGGATGAAAATCAAAAGAAGTCTGTAAAAGAGCGACCAAAATCCTCTTTGAATTCGAATTCAAAAGGATTGCAGTCAAGCAGGAGTATGCAAAATTCTGTCCCAAAGCAAGTGAATTCAGATGCCAGAGATTCTGTTCATGTTTCATCTTCTAAACCTTTGATACATCAGACTGCAAGTATATTAGGCTCTAGTGAGTCTAATGCATCATTGCACCATCAGAAGGTTTTACAAGTGCAGAATAAGATTTCATCTTCAGCGCCACAGAAAGTTGAAAAACTTAACCAAACAAACATCCACACTTCCTCCAAGTTGAATCAAAGTCATGTATCATCAGTGAATCCTTCTCCAATATCGAATTCTTCAATGCTGAGTGATGAAGAGCTTGCTCTTCTATTGCATCAAGAACTGAATAGTTCTCCTCGTGTACCTCGTGTGCCCCGAGCACGCCATGCAGGTAGCTTGCCCCAGTTGACTTCTGCTAGTGCTACAAGCATGCTAATGAAGCGAACATCGGGTGGAGGAAAGGATCATTATTTGGTATCTAGACGAAAACACAAGGATGCATCTAGACCTGGGTCTGGCAGTTCTCGTGAACTTGAAGATGAAGCTAAAAAGATAGAGAAGGAGAAGGGTCCATCCTCGTCTGATCAGAGGAAACTAGATATGTCATATGTGGAAGATGCTCCTGCAAGGGAAGAAGGCCTTGCATCTATGGCAGTGACAAACTCCATCACAAACAATACTGTTTCTTCCACCTCTGGAGTTGCAAACAGCGATGCATCCTCCCCTCCGGAGGATCAGAATTTGTCATCTATGCGTAACTCACCTAGGAATGTATCTGATGATGATACAGCAACTGCTGGAAGGCCAGTTCATCGCACCTTACCTGGTTTAATCAATGATATTATGAGCAAAGGCAGGCGTATGACATATGAGGAACTCTGTAATGCTGTGCTACCGCACTGGCATAACTTGAGGAAGCATAATGGAGAGCGTTATGCATACTCAAGTCACTCTCAGGCTGTTCTTGATTGTTTGAGGAACCGGCATGAATGGGCAAGGTTGGTTGATCGTGGTCCAAAGACAAATTCTAATAGGAAAAGGCGTAAACTGGATGCGGAAGAGTCTGATGATAACGGATATGGTAAGGGAAGAACTGCAAAAGATGTTGAAGGGAAGAACTTTGAGTTGCAAAAAGAAGAGTTCCCTAAAGGCAAGCGTAAAGCTCGAAAACGTAGGCGCCTTGCTCTTCAGGGAAGAGCAGTGAAGGATGTCAGGAGGAGACAGAAAGTTAGCTCGCTAACGGATGAGGATCTGGGTCCATTCTCCAATTCTAGTGAAGAGAGCATGTTCAGTGAAGATGAAATTCAGGCTGGCAGAATTTGTCCTGCTGGAAGTTCATCAGATGAGGCAGGTAGTGCCTAA
>Glyma10g31570.2 sequence type=predicted peptide gene model=Glyma10g31570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKGGRSHRPQSSDPPDEWVDGSWTVDCICGVTFDDGEEMVKCDECGVWVHTRCSRYVKGDDTFACDKCKARHNSNSNNTTTTTTNTTNPMETEVAQFLVELPTKTISMDNKKALPSRPRLWTDKPIEERVHVQGPPGGDPSIFAGQSASSIFTPQLWKACGYVPKKFSFKYNEFPFLNNDNDNEGGPAKDDSNDNGAGAGALVSLSKEGNNIASAAPVLNTSSPVGASVETRSGQGKGADTGKFGSEDVPPRVPSDVKKERTLLRPPVVHNSQRSKGDFVGNSSSKERSGKKRLRTSDREVDPRKKTLHSSKTVVTPTADGKQLEFCEDRGSKIFKADTRSIKNKNLKDMVVQEHVSDDHVAVDTTMEEPNNNLTTTEDSSEPLYPDMTKHGVSVGDVVAEEKASHKTPTLVEMSSKTDDAVTSSLKQNYVGNASVKEKDGDCLVADNADDTLVVRSAASPRTEGHCGSAPELVDNQVSQDLDRNMRSSSTKCKVKMRRDDVDNFRKPSNFHSSPMSDLKNNDKPSDHTSDIVKVNDAPVPSLPSCESKVGGFDISSEPIPADHTNKPNELSGDFCQRKQEPVGSEGSFETQKGFTETKDSLDAAKDPSKSEAIGCLPKVGKSSPTSSTMNSKSLGHDIKSEDTEIPNSFTKHGVMADSNIHTKNENCPSDAARDENQKKSVKERPKSSLNSNSKGLQSSRSMQNSVPKQVNSDARDSVHVSSSKPLIHQTASILGSSESNASLHHQKVLQVQNKISSSAPQKVEKLNQTNIHTSSKLNQSHVSSVNPSPISNSSMLSDEELALLLHQELNSSPRVPRVPRARHAGSLPQLTSASATSMLMKRTSGGGKDHYLVSRRKHKDASRPGSGSSRELEDEAKKIEKEKGPSSSDQRKLDMSYVEDAPAREEGLASMAVTNSITNNTVSSTSGVANSDASSPPEDQNLSSMRNSPRNVSDDDTATAGRPVHRTLPGLINDIMSKGRRMTYEELCNAVLPHWHNLRKHNGERYAYSSHSQAVLDCLRNRHEWARLVDRGPKTNSNRKRRKLDAEESDDNGYGKGRTAKDVEGKNFELQKEEFPKGKRKARKRRRLALQGRAVKDVRRRQKVSSLTDEDLGPFSNSSEESMFSEDEIQAGRICPAGSSSDEAGSA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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