SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G03340 | AT | Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 3 | chr2:1014724-1016936 REVERSE LENGTH=513 | SoyBase | E_val: 1.00E-26 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0043565 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding | SoyBase | N/A | ISS |
| PF03106 | PFAM | WRKY DNA -binding domain | JGI | ISS | |
| UniRef100_G8GB84 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: WRKY transcription factor n=1 Tax=(Populus tomentosa x P. bolleana) x P. tomentosa RepID=G8GB84_9ROSI | SoyBase | E_val: 4.00E-33 | ISS |
| UniRef100_I1L6A4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1L6A4_SOYBN | SoyBase | E_val: 2.00E-33 | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| WRKY131 | WRKY Transcription Factor |
|
Glyma10g31413 not represented in the dataset |
Glyma10g31413 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g171200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g31413.1 sequence type=CDS gene model=Glyma10g31413 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGGGTGCCAACCTCTTGCTCCTCCCACACAAGACGTTGCTGAACAAGTACACTCCTCCAATGATGCGGAAAAGGTGAAGTTTCGATTTGATCTTAACGCTAAACCTGATGAGGAGGAGGAAGTTAGTGCCAAAGTTGGTGGAGGGAGTGAAACACATGCTGCTGTATCTGAATCAGCTGACAACGTTGGACCTGACAATGGTTTGGAGCTCACTCTTAATAATGATGTTCATCCAACACATGCTGCTGATGACAGTGATTATGAAGAAGACAGAGCCAGTATTGGGGAAGGAGGATCTGACACTGAGAACAGCAGGAAGAGGAAGAGATCTTTGGAGGAATATAAGAAAGGGACTGGGAAGTCTTTCCATGGGGAAACAACAGTGGTGGTGCAATTTGAGAGCAAAAACGAGACCATATTGGATGATGGATATAACTGGCGAAAATATGGCCAGAAGGTTATCAAGGGACATACATACCCTAGGGCCTACTACAAATGCATAAGTGCTGGGTGTTATGTAAGAAAGCACGTGGAACGTGATTCATGCAACAGAAAAATTGTGATTAATACTTATGAGGGTAAACACAATCATGAACAACCACCCCCCAGAAGGAAACGTCACCAGATACAGCTTGTGGATGATGAAGAAGATGAAGACGAAGATGAAGATGATGGCCTAATGACTTTTCAATTTGCTGCGACTGGGAATTTTCTGAATAACCCAAACCCTGCAGAAACTGATCAAGTTCACACACTTCAACTTCGTAATGACATGAATCCTGATCAATTTGCCAATGGGTTTCTGAGTCCCAATAACCATTTTGGAAGTTTCAACAATAATATAAACATGAATATTGGGTCTTCTTCCTACACCCCCCAAATGCATTATTATTCTTCCTTGAATAATACTAAAGCCATGCCTCAAAGCTCCTATGGACTCAACTTTGGCAGTGATGCTGCCCCTCAACCTGGGCCTTCCGGGGTACCAGGTGCAGGAGATAATTAG
>Glyma10g31413.1 sequence type=predicted peptide gene model=Glyma10g31413 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEGCQPLAPPTQDVAEQVHSSNDAEKVKFRFDLNAKPDEEEEVSAKVGGGSETHAAVSESADNVGPDNGLELTLNNDVHPTHAADDSDYEEDRASIGEGGSDTENSRKRKRSLEEYKKGTGKSFHGETTVVVQFESKNETILDDGYNWRKYGQKVIKGHTYPRAYYKCISAGCYVRKHVERDSCNRKIVINTYEGKHNHEQPPPRRKRHQIQLVDDEEDEDEDEDDGLMTFQFAATGNFLNNPNPAETDQVHTLQLRNDMNPDQFANGFLSPNNHFGSFNNNINMNIGSSSYTPQMHYYSSLNNTKAMPQSSYGLNFGSDAAPQPGPSGVPGAGDN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
