SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G04260 | AT | Annotation by Michelle Graham. TAIR10: plastid transcriptionally active 3 | chr3:1123231-1127515 REVERSE LENGTH=910 | SoyBase | E_val: 0 | ISS |
| GO:0016556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA modification | SoyBase | N/A | ISS |
| GO:0042793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription from plastid promoter | SoyBase | N/A | ISS |
| GO:0045036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to chloroplast | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0009295 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleoid | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009508 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid chromosome | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| PTHR24015 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24015:SF211 | Panther | JGI | ISS | ||
| PF02037 | PFAM | SAP domain | JGI | ISS | |
| UniRef100_G7I651 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7I651_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LBT1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1LBT1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma10g31180 not represented in the dataset |
Glyma10g31180 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g36340 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g168600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g31180.1 sequence type=CDS gene model=Glyma10g31180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCTCACTCATCTTACCTTACACTTACACTTACGGTTACGCCCGCTTCCCCTTCAAACTGAACCGGTTCTCTCCCCGAGCCGTGACGGTTCGCGCCGCGGTTTCAGCTCCGGACAAGCGAGGCAGAAAGAAGAAGCAGTCGAAGGATGACGAAAGTGCGGTCGAGAACGGCCTCCGGTTCAGTTTCATGGAGGAGCTCATGGACCGAGCCAGGAACCGCGACTCAAACGGCGTCTCGGAAGTCATGTACGACATGATCGCCGCGGGACTCAGCCCCGGTCCTCGGTCGTTTCATGGCTTGGTGGTGTCGCACGCCCTCAACGGCGACGAAGAAGCCGCGATGGAATCGTTGAGAAGAGAGTTGGCCGCAGGTCTTCGACCGGTTCACGAGACGTTCTTGGCACTGATAAGGTTATTCGGGTCTAAAGGTCGCGCCACTAGAGGTCTAGAAATACTTGCAGCTATGGAAAAGCTAAATTATGATATTCGCCAAGCTTGGCTTATTCTCATTGAGGAACTTGTTCGTAACATGCATTTAGAAGATGCCAACGAAGTGTTCTTGAAGGGTGCCAAGGGTGGGCTTAAAGCTACTGATGAGGTTTATGATCTTCTGATCCAGGAAGACTGCAAAGTGGGGGACCATTCTAATGCGTTAGACATTGCCTATGAGATGGAGGCGGCTGGCCGGATGGCAACCACGTTTCATTTCAATTGCCTCCTCAGTGTGCAGGCTACCTGCGGAATACCTGAAATAGCTTTTGCAACATTTGAGAACATGGAATATGGAGAAGATTACATGAAGCCTGATACAGAGACATACAATTGGGTTATTCAAGCTTATACTAGAGCTGAATCTTATGACAGAGTACAAGATGTTGCTGAGTTACTTGGCATGATGGTTGAGGATCACAAACGTATACAGCCAAATGCGAAGACCCATGCGCTGTTGGTGGAGTGTTTTACCAAGTACTGTGTGGTACGAGAAGCTATTAGGCATTTCCGTGCTCTTAAAAACTTTGAAGGGGGTATAGAAGTTCTACATAATGAAGGGAACCATGGAGATCCACTTTCTTTGTACCTTCGGGCATTATGTCGGGAAGGAAGAATTGTTGAAATGCTTGAAGCTTTAGAAGCTATGGCCAAAGATAACCAGCCAATCCCCTCACGGGCAATGATCTTGAGCAGAAAATACCGGACATTAGTGAGCTCATGGATTGAACCATTACAAGAGGAGGCTGAAATTGGCTATGAGATTGATTATATTTCTAGATATATTGATGAGGGTGGCCTAACTGGGGAGCGTAAGCGGTGGGTGCCTCGAAGAGGTAAAACACCTCTAGATCCTGATGCTCATGGATTTATTTATTCAAACCCAATGGAGACATCCTTCAAGCAAAGATGCATGGAGGAGTTGAAGTTGCACAATAAAAAGCTTCTGAAGACCTTGCAGAATGAAGGACTTGCAGCTTTAGGGGATGATGTATCTGAATTTGATTATATTAGAGTGCAGGAAAGGCTAAAAAAGCTCATGAAGGGGCCTGAACAGAATGTTTTAAAGCCTAAGGCTGCTAGTAAAATGCTCGTGTCTGAACTGAAGGAAGAACTAGATGCACAAGGCTTGCCTATTGATGGAACTAGAAATGTTCTTTACCAGCGTGTACAGAAAGCAAGGAGAATAAATCGATCTCGTGGTAGGCCCCTTTGGGTTCCTCCCGTGGAAGAGGAGGAAGAAGAGGTGGACGAAGAGCTGGATGCATTAATTTCACGTATAAAGCTGGAGGAAGGAAATACAGAGTTCTGGAAACGTCGCTTTTTAGGAGAAGGCTTAAATGGTGATCAAGAAATGCCAACGGATGCAGTTCAATCAGATGTCCCTGAAGTTTTGGATGATGTTGATGCTATTGAAGATGCTGCAAAAGAGGTTGAAGATGATGAAGCAGATGATGAGGAGGAGGAAGCAGAGCAGGCAGAAGAGGAAGTAGAACCAGCAGAGAACCAAGATGTAAACAGGATAAAGGAGAAAGAAGTTGAAGCTAAAAGGCCTCTTCAAATGATTGGAGTCCAGTTGTTGAAAGATATTGATCAACCTACTGCTACATCAAAAAAGTTTAAAAGATCTCGCAGAGTGCAGGTTGAGGATGATGATGATGATGATTGGCTTCCGCTGAACCTATTTGAGGCATTTAAGGAAATGAGGAAACGGAAAATTTTTGATGTGTCAGACATGTATACATTAGCAGATGCTTGGGGATGGACATGGGAGAGAGAACTCAAGAACAAACCTCCTCGTAGATGGTCACAGGAAAGGGAAGTTGAGTTGGCAATCAAAGTTATGCACAAGGTCATAGAGTTGGGAGGGAGACCAACTATAGGAGATTGTGCCATGATATTGCGTGCAGCTATAAGGGCACCTCTACCTTCAGCTTTCTTGACAATTTTGCAAACAACTCATGCTCTTGGTTTTAAGTTTGGGAGTCCTCTTTATGATGAGACCATCTCTCTCTGCGTTGATCTTGGGGAACTAGATGCAGCTGTTGCTGTAGTTGCAGATTTGGAAACCACAGGGATCTCAGTTTCAGACCACACTTTAGATAGGGTGATTTCTGCCAAACAGAGGATTGACAATACCTCCAATGGTGTCATTAGGGATGCAGGATTGTAA
>Glyma10g31180.1 sequence type=predicted peptide gene model=Glyma10g31180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSLILPYTYTYGYARFPFKLNRFSPRAVTVRAAVSAPDKRGRKKKQSKDDESAVENGLRFSFMEELMDRARNRDSNGVSEVMYDMIAAGLSPGPRSFHGLVVSHALNGDEEAAMESLRRELAAGLRPVHETFLALIRLFGSKGRATRGLEILAAMEKLNYDIRQAWLILIEELVRNMHLEDANEVFLKGAKGGLKATDEVYDLLIQEDCKVGDHSNALDIAYEMEAAGRMATTFHFNCLLSVQATCGIPEIAFATFENMEYGEDYMKPDTETYNWVIQAYTRAESYDRVQDVAELLGMMVEDHKRIQPNAKTHALLVECFTKYCVVREAIRHFRALKNFEGGIEVLHNEGNHGDPLSLYLRALCREGRIVEMLEALEAMAKDNQPIPSRAMILSRKYRTLVSSWIEPLQEEAEIGYEIDYISRYIDEGGLTGERKRWVPRRGKTPLDPDAHGFIYSNPMETSFKQRCMEELKLHNKKLLKTLQNEGLAALGDDVSEFDYIRVQERLKKLMKGPEQNVLKPKAASKMLVSELKEELDAQGLPIDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEELDALISRIKLEEGNTEFWKRRFLGEGLNGDQEMPTDAVQSDVPEVLDDVDAIEDAAKEVEDDEADDEEEEAEQAEEEVEPAENQDVNRIKEKEVEAKRPLQMIGVQLLKDIDQPTATSKKFKRSRRVQVEDDDDDDWLPLNLFEAFKEMRKRKIFDVSDMYTLADAWGWTWERELKNKPPRRWSQEREVELAIKVMHKVIELGGRPTIGDCAMILRAAIRAPLPSAFLTILQTTHALGFKFGSPLYDETISLCVDLGELDAAVAVVADLETTGISVSDHTLDRVISAKQRIDNTSNGVIRDAGL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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