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Report for Sequence Feature Glyma10g31130

Feature Type:gene_model
Chromosome:Gm10
Start:39683896
stop:39686140
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g31130
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G64780AT Annotation by Michelle Graham. TAIR10: ammonium transporter 1;2 | chr1:24061021-24062565 REVERSE LENGTH=514 SoyBaseE_val: 0ISS
GO:0006810GO-bp Annotation by Michelle Graham. GO Biological Process: transport SoyBaseN/AISS
GO:0009624GO-bp Annotation by Michelle Graham. GO Biological Process: response to nematode SoyBaseN/AISS
GO:0010264GO-bp Annotation by Michelle Graham. GO Biological Process: myo-inositol hexakisphosphate biosynthetic process SoyBaseN/AISS
GO:0015695GO-bp Annotation by Michelle Graham. GO Biological Process: organic cation transport SoyBaseN/AISS
GO:0015696GO-bp Annotation by Michelle Graham. GO Biological Process: ammonium transport SoyBaseN/AISS
GO:0015843GO-bp Annotation by Michelle Graham. GO Biological Process: methylammonium transport SoyBaseN/AISS
GO:0072488GO-bp Annotation by Michelle Graham. GO Biological Process: ammonium transmembrane transport SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0008519GO-mf Annotation by Michelle Graham. GO Molecular Function: ammonium transmembrane transporter activity SoyBaseN/AISS
KOG0682 KOG Ammonia permease JGI ISS
PTHR11730Panther AMMONIUM TRANSPORTER JGI ISS
PTHR11730:SF8Panther AMMONIUM TRANSPORTER 1 JGI ISS
PF00909PFAM Ammonium Transporter Family JGI ISS
UniRef100_G7I667UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ammonium transporter n=2 Tax=Medicago truncatula RepID=G7I667_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1LBS7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LBS7_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma10g31130
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g31130 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g168200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g31130
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g31130
>Glyma10g31130.1   sequence type=CDS   gene model=Glyma10g31130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTCTCTCTTGCTCCGCCAACGACCTTGCCCCACTCATCAACGACACCGCCGCCGCCAACTACCTCTGCGCACAATTCGATTCCATTTCTAGAAAGCTCGTCGAAACAACCTACGCCGTCGACAACACCTACCTTCTGTTTTCAGCGTATCTTGTCTTCGCCATGCAGCTCGGCTTCGCCATGCTCTGCGCCGGCTCCGTCAGAGCCAAAAACACCATGAACATCATGCTCACCAACGTCCTCGACGCCGTCGCCGGCGGTCTCTCCTACTACCTATTCGGCTTTGCATTCGCCTTCGGCGGCCCCTCCAACGGCTTCATCGGCCGCCCAAACTTCCGCCTACGAGATTACCCGATGGGCTCCTCTATCTCCAGCTTCTTCCTCTACCAGTTGGTCTTAGCCATCGCCGACGCAGGAATCACCATCTCTCCCTTCGGCGACTACAGCTTCTTCCTCTACCAGTGGGCCTTCGCCATCGCCGCCGCAGGAATCACCAGCGGCTCCATCGCCGAGAGAACACAGTTCGTGGCTTACCTTATCTACTCTTCTTTCTTAACCGGTTTCGTTTACCCCATCGTTTCGCATTGGTTCTGGTCCTCAGACGGTTGGGCCAGCGCGACTCGTAGCCACGGAAATGTTTTATTCGGGTCTGGAGTCATCGACTTCGCGGGCTCAGGCGTTGTTCACATGGTTGGCGGGATAGCGGGCCTGTGGGGGGCTTTAATTGAAGGCCCGAGAATCGGCCGGTTCGACCGTTCGGGCCGGTCGGTTGCTTTACGTGGCCACAGCGCGTCTTTAGTTGTGCTTGGTACGTTTTTGTTATGGTTCGGCTGGTACGGCTTCAACCCTGGTTCGTTTGTGACAATAGACAAGGGGTATGAAAGTGGAGGGTATTATGGTCAATGGAGCGCTATAGGGAGGACAGCTGTCACGACGACATTGGCTGGGAGCACTGCGGCTCTGACGACGTTGTTCAGCAAGCGGTTATTGGTTGGCCACTGGAACGTGATTGACGTGTGTAACGGCCTGCTTGGCGGGTTCGCTGCCATTACATCGGGCTGTGCCGTTGTGGAACCGTGGGCCGCGATTGTCTGCGGGTTTGTGGCGGCGTGGGTTTTGATTTGGCTTAATAAGCTTGCCGCGAAGGTAGAGTACGATGATCCGTTGGAGGCGGCGCAGCTTCACGGCGGGTGCGGAGCTTGGGGGGTTTTCTTCACGGGATTGTTTGCGAAGAAAGTGTACGTGGAGGAGATTTACGGTGTTGGAAGGCCGTTCGGGGCTTTGATGGGTGGCGGAGGGAGGCTGCTGGCGGCGCAGGTGATTCAGATATTGGTGGTGTGCGGGTGGGTTACGGCGACCATGGCGCCGTTGTTCTATGGGCTTCATAAGATGAAACTGTTGAGAATTTCGAGGGATGATGAGACTGCGGGGATGGATTTGACGAGGCATGGTGGGTTTGCTTATGCATACCATGATGATGAAGATGGTTCAAGCAGGGGAGTAGGATTCATGATGCTTAGAATTGAGCCTGCTGGTACCTCTCCCTCTCCCCCCGCTGCACCACAAGTTTAA
Predicted protein sequences of Glyma10g31130
>Glyma10g31130.1   sequence type=predicted peptide   gene model=Glyma10g31130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASLSCSANDLAPLINDTAAANYLCAQFDSISRKLVETTYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAVAGGLSYYLFGFAFAFGGPSNGFIGRPNFRLRDYPMGSSISSFFLYQLVLAIADAGITISPFGDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHWFWSSDGWASATRSHGNVLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDRSGRSVALRGHSASLVVLGTFLLWFGWYGFNPGSFVTIDKGYESGGYYGQWSAIGRTAVTTTLAGSTAALTTLFSKRLLVGHWNVIDVCNGLLGGFAAITSGCAVVEPWAAIVCGFVAAWVLIWLNKLAAKVEYDDPLEAAQLHGGCGAWGVFFTGLFAKKVYVEEIYGVGRPFGALMGGGGRLLAAQVIQILVVCGWVTATMAPLFYGLHKMKLLRISRDDETAGMDLTRHGGFAYAYHDDEDGSSRGVGFMMLRIEPAGTSPSPPAAPQV*






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