Glyma10g31040 - SoyBase

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Report for Sequence Feature Glyma10g31040

Feature Type:	gene_model
Chromosome:	Gm10
Start:	39604863
stop:	39609994
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g31040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G04580	AT	Annotation by Michelle Graham. TAIR10: Signal transduction histidine kinase, hybrid-type, ethylene sensor \| chr3:1235576-1237965 REVERSE LENGTH=766	SoyBase	E_val: 0	ISS
GO:0000160	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphorelay signal transduction system	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0009738	GO-bp	Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009873	GO-bp	Annotation by Michelle Graham. GO Biological Process: ethylene mediated signaling pathway	SoyBase	N/A	ISS
GO:0010105	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of ethylene mediated signaling pathway	SoyBase	N/A	ISS
GO:0030968	GO-bp	Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response	SoyBase	N/A	ISS
GO:0035556	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0000155	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphorelay sensor kinase activity	SoyBase	N/A	ISS
GO:0000156	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphorelay response regulator activity	SoyBase	N/A	ISS
GO:0004673	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein histidine kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0004871	GO-mf	Annotation by Michelle Graham. GO Molecular Function: signal transducer activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0051740	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ethylene binding	SoyBase	N/A	ISS
KOG0519	KOG	Sensory transduction histidine kinase	JGI		ISS
PTHR24423	Panther	TWO COMPONENT SIGNAL TRANSDUCTION PROTEIN-RELATED	JGI		ISS
PTHR24423:SF158	Panther		JGI		ISS
PF00072	PFAM	Response regulator receiver domain	JGI		ISS
PF00512	PFAM	His Kinase A (phosphoacceptor) domain	JGI		ISS
PF01590	PFAM	GAF domain	JGI		ISS
UniRef100_E7D235	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ethylene receptor like-protein n=1 Tax=Cicer arietinum RepID=E7D235_CICAR	SoyBase	E_val: 0	ISS
UniRef100_I1LBS2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LBS2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g31040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g31040

Paralog	Evidence	Comments
Glyma20g36440	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g31040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g167300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g31040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g31040

Limit To All Plant Sequences

>Glyma10g31040.1   sequence type=CDS   gene model=Glyma10g31040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAATTACTCCTCCTCTTCTTCATCATCTGTGGTTTTTGTTGTTGCTGCTGCTGCTTTGTTATCTTGTTCTCTGTGCTTCTGCCACCGATGTTGAATTTGACAACTGCAACTGCGATGACGGGGAAGGTATTTGGAGCATACATAGCATCCTCGTTGGCCAAAAAGTCAGCGATTTTTTCATTGCCGTTGCGTATTTTTCCATACCCATTGAACTCCTTTACTTTGTTAGCCGTTCAAACGTTCCATTCAAATTGCTCTTCCTTCAATTTATTGCCTTCATAGTGCTCTGTGGCATGACCCATTTACTCAATGCTTATTCTTATCATGGCCCTCCCTCCTTCCAATTGCTGCTTTCCCTAACCGTTGCTAAATTCCTCACCGCTCTTGTTTCCTGTGCAACTGCTTTAACCCTTCCCCCTCTCATCCCTCTTCTCCTCAAAGTCAAAGTTAGGGAGCTTTTCCTGAGGCAGAACGTGATGGAGCTTGGCCAAGAGGTTGGGATGATGAAGAAACAGAAGGAGGCAAGCTGGCATGTTAGGATGCTCACTAGGGAAATTAGGAAGTCTCTTGATAAGCACAACATCCTCTACACCACCCTTGTTGAGCTTTCAAAGGCGTTGGATTTGCATAATTGTGCAGTTTGGATGCCGAACGAGGACCGACGAGAGATGCACTTGACTCACGAGTTGAAAACCAACTCTGCCAAGAATTTTCAGAATTCTATTCCGGTGAACGACCCTGATGTGTTGGAGATAAGAAAGACCAAAGGGGTGAAGATTCTGGGGCCCGAGTCTGCTCTAGGAGCTGCGAGTAGTGGTGGCTCTGTGGAGTTGGGTGCTGTGGCGGCTATTCGCATGCCGTTACTTCATGTGTCAAATTTCAAAGGAGGGACGCCGGAGTTGGTTGAGACGTGTTATGCTATACTTGTTTTGGTTCTGCCAAGTTCAAGCACTAGGGTTTGGACCTACCATGAGATGGAGATAGTTGAAGTGGTTGCTGATCAGGTGGCTGTTGCCCTGTCTCATGCATCTGTTCTTGAAGAGTCTCAGCTGATGAGACAGAAGCTGGAAGAGCGGAACCGAGCACTGCAACAGGCTAAAAAGAATGCAATGATGGCCAGCCAGGCACGGAAGTCGTTTCAGAAGGTGATGAGCCATGGAATGCGGAGGCCTATGCATTCTGTTCTGGGGATGCTGTCATTGTTTCAAGAGGATAATTTGAGGTCTGAGCAGAAGATTATTGGTGATACAATGTTGAAAGTTGGACATGTGCTCTCCAGTTTGATTAATGATGTAATGGAGATTTCAGAAAATGAAAAGGGAGGCTTCCGGTTAGAGATGAAACCTTTCCTTCTGCATTCAATGGTGAGGGAAGCTGCTTCCATTGCCAAGTGCTTGTGTGTTTATGAAGGCTTTGGTTTTGAAATTGATGTCCAGAAGTCTTTGCCTGAAACAGTTATGGGTGATGAGGCAAGGACTTTTCAAGTAATTTTACACATGATTGGCTATTTATTGAACATGAATGACAAAGGGACTCTCAATTTTCGAGTTTTTCTTGAAAGCGATGGTGGAGACAGGGATGATAAAAATATTGGAATATGGAGGTCAAGCAATCAAAATGAATATGTACATATAAAATTTGATTTTCAGATTACTGAGAGTTCTCAGTCAGATGAAGCAATTTCAACAATACATTATACTGGTAGGAGGCAGTACTACAACAATGAACCTAAGGGGGGCCTGAGCTTCAGCATGTGCAAAAAGTTGGTACAGATGATGCAAGGTAATATATGGATATCACCGAACTCCCTTGGTTTGGTGCATGGCATGACACTTCTTCTCAAGTTTCAGATAGGACCATCACTTGAAAAATCCATATTTGCACCTAAAGATTATTCAAGCTCACAGTTCAGAGGCCTTAAGGTTGTGTTAGCCGAGGACGATGGTGTAAACAGGACCGTGACCAAGAAGCTACTTGAGAAGCTTGGTTGTCAAGTAATTGCTGTTTCATCAGGGTTTGAGTGCCTGAGTGCTGTAAGTGGTGCTGGTAACTCATTCAGAATTATCCTGTTGGATCTTCACATGCCCGAAATGGATGGCTTTGAATTGGCAAAGAGAATCCGGAAGTTCCATAGCCGTAGTTGGCCCTTGATTATAGCTCTTATAACAAGTGCAGAAGAACATGTGAGGGAGAAATGCCTACTTGCAGGAATGAATGGATTGATCCAAAAACCTATCGTACTTCATCAGATAGCAGATGAACTTAGAACAGTCCTACAAAGAGCAGGTGAAAAACTGTGA

Predicted protein sequences of Glyma10g31040

Limit To All Plant Sequences

>Glyma10g31040.1   sequence type=predicted peptide   gene model=Glyma10g31040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEITPPLLHHLWFLLLLLLLCYLVLCASATDVEFDNCNCDDGEGIWSIHSILVGQKVSDFFIAVAYFSIPIELLYFVSRSNVPFKLLFLQFIAFIVLCGMTHLLNAYSYHGPPSFQLLLSLTVAKFLTALVSCATALTLPPLIPLLLKVKVRELFLRQNVMELGQEVGMMKKQKEASWHVRMLTREIRKSLDKHNILYTTLVELSKALDLHNCAVWMPNEDRREMHLTHELKTNSAKNFQNSIPVNDPDVLEIRKTKGVKILGPESALGAASSGGSVELGAVAAIRMPLLHVSNFKGGTPELVETCYAILVLVLPSSSTRVWTYHEMEIVEVVADQVAVALSHASVLEESQLMRQKLEERNRALQQAKKNAMMASQARKSFQKVMSHGMRRPMHSVLGMLSLFQEDNLRSEQKIIGDTMLKVGHVLSSLINDVMEISENEKGGFRLEMKPFLLHSMVREAASIAKCLCVYEGFGFEIDVQKSLPETVMGDEARTFQVILHMIGYLLNMNDKGTLNFRVFLESDGGDRDDKNIGIWRSSNQNEYVHIKFDFQITESSQSDEAISTIHYTGRRQYYNNEPKGGLSFSMCKKLVQMMQGNIWISPNSLGLVHGMTLLLKFQIGPSLEKSIFAPKDYSSSQFRGLKVVLAEDDGVNRTVTKKLLEKLGCQVIAVSSGFECLSAVSGAGNSFRIILLDLHMPEMDGFELAKRIRKFHSRSWPLIIALITSAEEHVREKCLLAGMNGLIQKPIVLHQIADELRTVLQRAGEKL*

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