Glyma10g30940 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma10g30940

Feature Type:	gene_model
Chromosome:	Gm10
Start:	39538523
stop:	39540018
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g30940

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G08650	AT	Annotation by Michelle Graham. TAIR10: phosphoenolpyruvate carboxylase kinase 1 \| chr1:2752206-2753232 FORWARD LENGTH=284	SoyBase	E_val: 2.00E-118	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0004713	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG0032	KOG	Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily	JGI		ISS
PTHR24349	Panther	SERINE/THREONINE-PROTEIN KINASE	JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_Q8GSL0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phosphoenolpyruvate carboxylase kinase n=1 Tax=Glycine max RepID=Q8GSL0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q8GSL0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Phosphoenolpyruvate carboxylase kinase n=1 Tax=Glycine max RepID=Q8GSL0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g30940

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g30940

Paralog	Evidence	Comments
Glyma20g36520	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g30940 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g166600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g30940

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g30940

Limit To All Plant Sequences

>Glyma10g30940.1   sequence type=CDS   gene model=Glyma10g30940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGCACAGCCCTAAAGACGAATTACCAGCTTAGCGAGGAGATCGGTCGCGGTCGTTTCGGCACCATCTTCCGCTGCTTCCACCCACTCTCCAACGAACCCTACGCCTGCAAACTCATCGACAAATCCCTCCTCCATGACTCCACCGACCGCGACTGCCTCCAGAACGAACCCAAATTCATGACCCTCCTTTCACCTCACCCAAACATCCTTCAAATCTTCCATGTTTTCGAGGACGACCAATATCTCTCCATAGTAATGGATCTCTGCCAACCCCACACGCTTTTCGACCGCATGGTCGATGGTCCCATCCAGGAGTCCCAAGCCGCCGCCCTCATGAAGAACCTTCTGGAAGCTGTCGCGCACTGCCACCGCCTCGGCGTGGCCCACCGCGACATTAAACCCGACAATATTCTGTTCGATTCGGCGGACAATCTTAAACTGGCGGACTTCGGTTCCGCGGAGTGGTTTGGGGATGGGAGGAGCATGAGCGGCGTGGTGGGGACGCCGTATTACGTGGCGCCGGAGGTTCTGTTGGGGAGGGAGTACGATGAGAAGGTTGATGTGTGGAGCTGTGGGGTGATTTTGTATATAATGTTGGCGGGGATTCCCCCTTTTTACGGAGATTCTGCGGCGGAGATCTTTGAGGCTGTGGTTAGGGCTAATCTTAGGTTCCCTTCTAGAATCTTCCGGACAGTGTCCCCCGCCGCCAAGGATCTCTTGCGAAAAATGATCTGTAGGGATTCTTCTAGAAGGTTCTCCGCAGAACAAGCCTTGAGACATCCTTGGATCTTGAGTGCGGGTGACACGGCTGAACTCACTTGA

Predicted protein sequences of Glyma10g30940

Limit To All Plant Sequences

>Glyma10g30940.1   sequence type=predicted peptide   gene model=Glyma10g30940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCTALKTNYQLSEEIGRGRFGTIFRCFHPLSNEPYACKLIDKSLLHDSTDRDCLQNEPKFMTLLSPHPNILQIFHVFEDDQYLSIVMDLCQPHTLFDRMVDGPIQESQAAALMKNLLEAVAHCHRLGVAHRDIKPDNILFDSADNLKLADFGSAEWFGDGRSMSGVVGTPYYVAPEVLLGREYDEKVDVWSCGVILYIMLAGIPPFYGDSAAEIFEAVVRANLRFPSRIFRTVSPAAKDLLRKMICRDSSRRFSAEQALRHPWILSAGDTAELT*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain