Glyma10g30890 - SoyBase

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Report for Sequence Feature Glyma10g30890

Feature Type:	gene_model
Chromosome:	Gm10
Start:	39487218
stop:	39488955
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g30890

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G07090	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF640) \| chr1:2174202-2174792 REVERSE LENGTH=196	SoyBase	E_val: 6.00E-78	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF04852	PFAM	Protein of unknown function (DUF640)	JGI		ISS
UniRef100_I1LBQ5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LBQ5_SOYBN	SoyBase	E_val: 6.00E-127	ISS
UniRef100_Q9M836	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: T27C4.16 protein n=1 Tax=Arabidopsis thaliana RepID=Q9M836_ARATH	SoyBase	E_val: 7.00E-73	ISS

Expression Patterns of Glyma10g30890

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g30890

Paralog	Evidence	Comments
Glyma20g36580	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g30890 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g166100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g30890

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g30890

Limit To All Plant Sequences

>Glyma10g30890.2   sequence type=transcript   gene model=Glyma10g30890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTTGTCCTGTTTCGGCACAACACTCTCCTCTCCTTCATTTAACCCTCGGTTCTTCACCACTCTCCCACCCCACCCTTTCTCTCAGTTCCGGTACGACATTACATAACTCTCAGTTTCTCGCGCTTTTCTGGAAACAAATACCTGATGTCCCTGATCCCATCCTTTACCCTTTACCCTTTACCCAGGAATCATTCCATTTCCCACCAATTACCACTCTCACACTCCGAGCCAACATTAACCAAACCTTATTCCCTTCCTTTCCTCTCTCTCTCTCTCTCTTGAAAAATAATGGAAACCACTCACCATTCTAGCTTTCATCTGTCACTGCCCAGGTTGCTGCTGTCTTCTCGGTCTTCCCTTTCCAGCCACACCCTAGTCATCATCTCAGGCAATCTTTCTTTCTCTGCATGATATTAATATTATATTCTTTTTTCTAATAAATATCACTACTACACATCAATATCAATATTCATCAATATTATTATGAAAAGAAAACCCTAGTCCTTGGAAGAACGAGAAGAAGTTTTCGTTAGCAAAGCTATCCAAGTAGCATCATATTAGTCTCAGGCTCTGCAAGATCTAAAGCAGATCCAAGGGTTTAAAGAAAAGCATATCAGATCCACGGATTTAGTTTCTGAATCAAAAAACGTCGTTTCAAACGTTACAAACCCCAGCAGCAGGTACAAGATGGAGACAGTACCCACCCCGACCACCACGAATCATCCAACGACGGCGGCGGCAGTGTCGTCGCCGTCTTCGGGAAGCAACAACAGCGGGAGCACTACTACTCCGAGCCGCTACGAGAACCAAAAGCGAAGGGACTGGAACACGTTCTGCCAGTACCTGAGGAACCACCGTCCGCCACTCTCCTTGGCCTTGTGCAGCGGTGCGCACGTGCTGGAATTCCTCCACTACCTCGACCAGTTCGGGAAGACTAAGGTTCATAACCACCCTTGCCCGTTCTTCGGTCTCCCCAACCCACCTGCCCCATGTCCCTGCCCGCTCCGCCAAGCCTGGGGCAGCCTCGACGCCCTCATCGGCCGCCTCCGCGCCGCCTACGAGGAGAACGGCGGCCGCCCGGAGACCAACCCCTTCGGCGCACGCGCCGTCAGGATTTACCTTCGCGATGTTCGCGATTTTCAGGCAAAGGCGAGAGGTGTTAGCTACGAGAAGAAGAGGAAGAGGCCAAAGCCTAAGGTCACTCCCACTCCTACTTAATTGAGAAGCTTGTTGCTACCAATGTTTCACCACAGGTGCTTTTGTTGTCTCTACGAAGACGTGTTGAGATGATGATGCCCTTTAAATTGTTCTCGCTTCTGGAGTCCGGGGAAGTAGATAGTGGTAATTAAGTGCCACCACCCTGCCGCCAACTACTACTCTAGAAGATATCTTATCATATTTGTACTCAAATTAATATATAATATATCATGTTCATCATCTAGTGTATTTATGAAGCATGCACTTGAATCTCTACCCTCTCTCCTGTACGTGAGAGCTTTTTTTCAAAATGTTGATTGAACTTTACAGGGGATTAATTAATTGGATGTGGATGTTGAATAAGCTGGTGTGTGTGTCTATA

Coding sequences of Glyma10g30890

Limit To All Plant Sequences

>Glyma10g30890.1   sequence type=CDS   gene model=Glyma10g30890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGACAGTACCCACCCCGACCACCACGAATCATCCAACGACGGCGGCGGCAGTGTCGTCGCCGTCTTCGGGAAGCAACAACAGCGGGAGCACTACTACTCCGAGCCGCTACGAGAACCAAAAGCGAAGGGACTGGAACACGTTCTGCCAGTACCTGAGGAACCACCGTCCGCCACTCTCCTTGGCCTTGTGCAGCGGTGCGCACGTGCTGGAATTCCTCCACTACCTCGACCAGTTCGGGAAGACTAAGGTTCATAACCACCCTTGCCCGTTCTTCGGTCTCCCCAACCCACCTGCCCCATGTCCCTGCCCGCTCCGCCAAGCCTGGGGCAGCCTCGACGCCCTCATCGGCCGCCTCCGCGCCGCCTACGAGGAGAACGGCGGCCGCCCGGAGACCAACCCCTTCGGCGCACGCGCCGTCAGGATTTACCTTCGCGATGTTCGCGATTTTCAGGCAAAGGCGAGAGGTGTTAGCTACGAGAAGAAGAGGAAGAGGCCAAAGCCTAAGGTCACTCCCACTCCTACTTAA

>Glyma10g30890.2   sequence type=CDS   gene model=Glyma10g30890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGACAGTACCCACCCCGACCACCACGAATCATCCAACGACGGCGGCGGCAGTGTCGTCGCCGTCTTCGGGAAGCAACAACAGCGGGAGCACTACTACTCCGAGCCGCTACGAGAACCAAAAGCGAAGGGACTGGAACACGTTCTGCCAGTACCTGAGGAACCACCGTCCGCCACTCTCCTTGGCCTTGTGCAGCGGTGCGCACGTGCTGGAATTCCTCCACTACCTCGACCAGTTCGGGAAGACTAAGGTTCATAACCACCCTTGCCCGTTCTTCGGTCTCCCCAACCCACCTGCCCCATGTCCCTGCCCGCTCCGCCAAGCCTGGGGCAGCCTCGACGCCCTCATCGGCCGCCTCCGCGCCGCCTACGAGGAGAACGGCGGCCGCCCGGAGACCAACCCCTTCGGCGCACGCGCCGTCAGGATTTACCTTCGCGATGTTCGCGATTTTCAGGCAAAGGCGAGAGGTGTTAGCTACGAGAAGAAGAGGAAGAGGCCAAAGCCTAAGGTCACTCCCACTCCTACTTAA

Predicted protein sequences of Glyma10g30890

Limit To All Plant Sequences

>Glyma10g30890.1   sequence type=predicted peptide   gene model=Glyma10g30890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METVPTPTTTNHPTTAAAVSSPSSGSNNSGSTTTPSRYENQKRRDWNTFCQYLRNHRPPLSLALCSGAHVLEFLHYLDQFGKTKVHNHPCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRPETNPFGARAVRIYLRDVRDFQAKARGVSYEKKRKRPKPKVTPTPT*

>Glyma10g30890.2   sequence type=predicted peptide   gene model=Glyma10g30890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METVPTPTTTNHPTTAAAVSSPSSGSNNSGSTTTPSRYENQKRRDWNTFCQYLRNHRPPLSLALCSGAHVLEFLHYLDQFGKTKVHNHPCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRPETNPFGARAVRIYLRDVRDFQAKARGVSYEKKRKRPKPKVTPTPT*

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