Glyma10g30410 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma10g30410

Feature Type:	gene_model
Chromosome:	Gm10
Start:	39083296
stop:	39086564
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g30410

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G28770	AT	Annotation by Michelle Graham. TAIR10: bZIP transcription factor family protein \| chr5:10796648-10798147 REVERSE LENGTH=314	SoyBase	E_val: 4.00E-80	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009410	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to xenobiotic stimulus	SoyBase	N/A	ISS
GO:0030968	GO-bp	Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response	SoyBase	N/A	ISS
GO:0071215	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0071333	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to glucose stimulus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0042802	GO-mf	Annotation by Michelle Graham. GO Molecular Function: identical protein binding	SoyBase	N/A	ISS
GO:0046982	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein heterodimerization activity	SoyBase	N/A	ISS
PTHR22952	Panther	CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED	JGI		ISS
PTHR22952:SF67	Panther	ATBZIP25/BZO2H4 (ARABIDOPSIS THALIANA BASIC LEUCIN	JGI		ISS
PF00170	PFAM	bZIP transcription factor	JGI		ISS
PF12498	PFAM	Basic leucine-zipper C terminal	JGI		ISS
UniRef100_B2DBE7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: BZIP protein n=1 Tax=Glycine max RepID=B2DBE7_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_B2DBE7	UniRef	Annotation by Michelle Graham. Best UniRef hit: BZIP protein n=1 Tax=Glycine max RepID=B2DBE7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g30410

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g30410

Paralog	Evidence	Comments
Glyma20g36750	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g30410 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g162100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g30410

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g30410

Limit To All Plant Sequences

>Glyma10g30410.1   sequence type=CDS   gene model=Glyma10g30410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAGGGTATTCTCAGTGGACGATATCTCCGATCATTTCTGGCCGCCGCCTCCGATCCCCGTCTCCGGCGCCAACACCTCCTCTCAGATGAGCCGCAGCGCCTCCGAGTGGGCCTTTCAGCGCTTCATCCAGGAAGCTTCCGCCTCCGCACCCTCTCCTCCGTCTTCTTCCTCCCCCGCCGACGTCGTATTCGTGGAGATCGATGATCAGCCCAAACCCACCCCTCCGCCTCCGTCACACGGCGGCGTTCTGCCCAGTGACCCTGGTCCCGTGGCCCTTGACTCCGAGGAATACCAGGCCTTTCTCAAGAGCAAGCTCAACCTCGCATGCGCCGCCGTCGCCATGACTAGGGGATCTTTGGCTAAATCTCAAGACCCGTCCCCTTTTTCTGATGGTGGATCACAGCCGACTAATCCTTCTCTAGTTGGATCTCAGACTACTTCTAAAGGATCTATTCCTTCTGGAAATGATCAATCTAAGTTACAAGATAAAGATATCAATGCACCAGTTGGGATTCCTTCCATACCTGCCATACAAAAGAAACCTGCTGTTGCAATTAGGCCATCTACAAGTGGATCATCAAGAGAACAGTCAGATGATGAGGACATTGAGGGAGAGACATCTATGAATGACAACACAGACCCTGCTGATGTAAAACGAGTAAGGAGGATGCTATCCAATAGGGAGTCAGCCCGTCGCTCTAGAAGAAGAAAGCAGGCTCATTTAACTGACCTAGAAACACAGGTTTCTCAATTAAGAGGTGAAAATTCTACCTTGTTAAAGCGCCTTACTGATGTTAGTCAGAAATACAGCGACTCTGCTGTTGACAACAGAGTTTTAAAAGCTGATGTTGAAACATTAAGAGCAAAGGTGAAGATGGCTGAAGAGACCGTCAAAAGAATTACTGGGTTGAACCCAATGCCTCATGCCATGTCTGATATATCATCATTGGGCCTGCCATCATTTGATGGAAGAAGCCCTTCAGACACTTCAGCTGATGCATCTGTTCCTGTGCAAGATGATCCACATCATCACTTCTATCAACCCACATTGAATAATCCTATTCCCAGTCATGATCCGATAGTCAACAATGGTTTGGGGGGCATTTCTTCAATTGAAAATGTGCAGCAGCAGAACGCTGCAGCAGTGGTAGGTGGGAACAAGATAGGTCAAACAGCATCCCTGCAGCGGGTGGCTAGCTTGGAACATCTTCAGAAGCGGATTCGTGGTGGACCTCCATCTGAGCAGTAA

Predicted protein sequences of Glyma10g30410

Limit To All Plant Sequences

>Glyma10g30410.1   sequence type=predicted peptide   gene model=Glyma10g30410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDRVFSVDDISDHFWPPPPIPVSGANTSSQMSRSASEWAFQRFIQEASASAPSPPSSSSPADVVFVEIDDQPKPTPPPPSHGGVLPSDPGPVALDSEEYQAFLKSKLNLACAAVAMTRGSLAKSQDPSPFSDGGSQPTNPSLVGSQTTSKGSIPSGNDQSKLQDKDINAPVGIPSIPAIQKKPAVAIRPSTSGSSREQSDDEDIEGETSMNDNTDPADVKRVRRMLSNRESARRSRRRKQAHLTDLETQVSQLRGENSTLLKRLTDVSQKYSDSAVDNRVLKADVETLRAKVKMAEETVKRITGLNPMPHAMSDISSLGLPSFDGRSPSDTSADASVPVQDDPHHHFYQPTLNNPIPSHDPIVNNGLGGISSIENVQQQNAAAVVGGNKIGQTASLQRVASLEHLQKRIRGGPPSEQ*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain