Glyma10g30070 - SoyBase

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Report for Sequence Feature Glyma10g30070

Feature Type:	gene_model
Chromosome:	Gm10
Start:	38768258
stop:	38776250
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g30070

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G08720	AT	Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein \| chr1:2774089-2779077 FORWARD LENGTH=933	SoyBase	E_val: 0	ISS
GO:0000165	GO-bp	Annotation by Michelle Graham. GO Biological Process: MAPK cascade	SoyBase	N/A	ISS
GO:0002229	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to oomycetes	SoyBase	N/A	ISS
GO:0006487	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation	SoyBase	N/A	ISS
GO:0008219	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell death	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009617	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to bacterium	SoyBase	N/A	ISS
GO:0009620	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fungus	SoyBase	N/A	ISS
GO:0009723	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus	SoyBase	N/A	ISS
GO:0009788	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of abscisic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0046777	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation	SoyBase	N/A	ISS
GO:1900150	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of defense response to fungus	SoyBase	N/A	ISS
GO:1900424	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of defense response to bacterium	SoyBase	N/A	ISS
GO:2000031	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005769	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: early endosome	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0004709	GO-mf	Annotation by Michelle Graham. GO Molecular Function: MAP kinase kinase kinase activity	SoyBase	N/A	ISS
GO:0004712	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine/tyrosine kinase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
KOG0192	KOG	Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs	JGI		ISS
PTHR23257	Panther	SERINE-THREONINE PROTEIN KINASE	JGI		ISS
PTHR23257:SF80	Panther	MAP3K DELTA-1 PROTEIN KINASE	JGI		ISS
PF07714	PFAM	Protein tyrosine kinase	JGI		ISS
UniRef100_D2DF33	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: EDR1 n=1 Tax=Glycine max RepID=D2DF33_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_UPI000233CC4A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233CC4A related cluster n=1 Tax=unknown RepID=UPI000233CC4A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g30070

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g30070

Paralog	Evidence	Comments
Glyma20g37330	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g30070 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g159200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g30070

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g30070

Limit To All Plant Sequences

>Glyma10g30070.1   sequence type=CDS   gene model=Glyma10g30070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGAGAGAGTGAAGAAAGAAAAGCAAACGGGGGAGAAAAGGGAGAGGATGAAGAACATCTTCAAGAAGCTGCACATAGGTAGCAGCCACGATCCTCATCGATCCAATGAGGCTTCACCGTCTGTGCCGTCGCCGTCGTGCGTTGCCGATCAGTCCCAGAGCTCCGCCGCCACTCCGGCGAGTCCTTCGTCGGCGTCGGCGTCGGCGTCCACGGTGGTGGTGACTCCCGGAGGAGGAGGCGGCGGCGCGAGTCCGGTGATGAATCGGCAGGACTTTTTCTCGTCGGAGGAGGAGTTTCAGGTTCAGCTAGCCCTAGCTATCAGCGCTTCGAATTCGGAGTTCCGTGAGGATCCTGAGAAGGATCAGATCCACGCGGCGACGCTTTTGAGCTTGGGAGGCCATCGAATCGATTCGGCGCGGAACAAGGATGATGTGGCGGAGGCGCTGTCGAGGCAGTACTGGGAATATAATGTGCTTGACTATGAGGAGAAAGTGGTAGATGGTTTTTATGATGTATATGGGCCCTATAATGATTCAGTAATGCAAGGAAAGATGCCATCTCGAACAGATCTTGAAGCAAACCCTGGAGGTTCTGAGTTGGTCATTGTTAATCGAACAATTGATCCTTCTCTGGAGGAACTGATACAAATTGCACAATGCATTGCATTAGACTGCCCTGTCTCTAGTTTGGTACAAAGGCTTGCTGAACTTGTTACAAGTCATATGGGTGGTCCTGTAAAGGATGCTAGTATTATGTTAGCAAGATGGACAGAAACAAGAGCAGAGTTAAAGACATCTCTTCACACAATTGTATTGCCTCTTGGGTCCTTAAATATTGGGCTCTCTAGGCATCGTGCTTTGCTTTTCAAGGTATTAGCTGACAACATTAATATGCCTTGTAGACTGGTAAAAGGTAGTCATTACACTGGTGTCGAGGATGATGCTGTCAACATTATAAAGTTGGAGGATGAAAGGGAGTTTTTGGTTGATCTCATGGCTGCTCCAGGGACACTTATCCCAGCTGATATTTTAAGCACCAAGGATAGTGCCTTTAAGCCTTACAATCCCAAGATTTGGCCAAGTTTACCCTCCACTAAGGATAATGAATTTTCTTACTCAAGACCTATCCAACCATCTCATGGTGAAGGTAGTAGTCAAAATTCTGTGGTAAAAGATTATTCACTGCCCTGGAATGGAAAACCATATTTTGAGAAGTCAGAGCCTTCAAACTTAGGTTTGAGTAGAGACAGTGGCGTTGGTCCTTCTAAAATTCCTAATAAAGGGACTCCTAACCAACTAGAAAATTTGCCAGCCTTGTCTGGTACTTCTCTGTACAAAGGGACTCTTGGAATGAATACAGTTGGTGATGGGACAAGATTGAATGTCAATGTTGTACCATATACTAATAACAGCCCCAATGACTCTCGGAACCTTTTTGCAGATCTTAACCCATTCCAAATAAAAGGAATGGGGAAGGCCCCTGTGCATAACAAACCTGTGGAAAATAAACCTCCTGAGCTTAAAAGTACTAAAAACAATGCTGTTTCTGGTCGACCCCCAGTGCCACTGATGTGGAAGAATCGTCATGCTTACAATGAAGACCCCAGGAAAACTAATCATAATCCTAATGAATACAACCCTCCCTTATTTGTTTCCAATGGTTCTTCTATGTCTGAAATTATTGACCTTAGTAGTTCCAAGCCGTTGTATAATTCAAATATAAATAATGATGTAAATGCTCAAACTTTGGCGCAAGTTACTGGTTCAGTTTCACCACCTAATCATGACCAGAGGAACTGTACATATGACAGATTCATGGGAAGCAATTTGAAATTAAAAGATCCAGAGAGTCCTAGCTCATCAATTGATTCCATCACAAACAGGGTTGATCAAATATTGGATGATGTAGATGTTGGTGAATGCGAGATTCCATGGGAGGATCTGGTTCTTGGTGAAAGAATTGGTATAGGTTCATATGGAGAGGTATACCATGCTGACTGGAATGGCACGGAGGTTGCTGTGAAGAAATTTTTGGATCAGGATTTTTCAGGCGCTGCATTATCAGAATTCAAAAGAGAAGTGCGGATAATGCGTAGGCTACGTCATCCAAATATTGTTCTTTTTATGGGTGCTGTTACTCGTCCTCCCAATCTGTCAATCATTTCAGAGTATCTACCAAGAGGAAGCTTGTACCGAATTCTTCATCGCCCTAATTGTCAGATTGATGAGAAACGAAGAATAAAAATGGCTCTGGATGTGGCTAGGGGCATGAATTGCTTACACACCAGCACACCTACAATTGTTCATCGAGATCTAAAGTCTCCAAATCTTTTGGTTGATAAGAACTGGAATGTTAAGGTATGTGATTTTGGGTTGTCACGGTTGAAGCACAACACTTTTTTGTCATCCAAGTCAACTGCTGGAACGCCGGAATGGATGGCTCCTGAAGTTCTCCGCAATGAGCCCTCAAATGAGAAATGCGATGTTTATAGTTTTGGAGTCATCTTATGGGAGCTTGCCACTCTAAGGTTGCCGTGGAGTGGAATGAATCCTATGCAAGTTGTTGGTGCCGTTGGTTTCCAAAACCGTAGACTTGATATTCCTAAGGAAGTCGATCCTATAGTTGCAAGAATAATCTGGGAGTGTTGGCAACAGGATCCAAATTTGCGGCCCTCGTTTGCGCAACTCACAGTGGCTCTAAAGCCTCTACAGCGTCTGGTTATCCCATCTTATCAAGATCAGTTAGCTCCACCTATGCCGCAGGAGATTTCTGTAAATTCCACCCCCTGA

Predicted protein sequences of Glyma10g30070

Limit To All Plant Sequences

>Glyma10g30070.1   sequence type=predicted peptide   gene model=Glyma10g30070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSERVKKEKQTGEKRERMKNIFKKLHIGSSHDPHRSNEASPSVPSPSCVADQSQSSAATPASPSSASASASTVVVTPGGGGGGASPVMNRQDFFSSEEEFQVQLALAISASNSEFREDPEKDQIHAATLLSLGGHRIDSARNKDDVAEALSRQYWEYNVLDYEEKVVDGFYDVYGPYNDSVMQGKMPSRTDLEANPGGSELVIVNRTIDPSLEELIQIAQCIALDCPVSSLVQRLAELVTSHMGGPVKDASIMLARWTETRAELKTSLHTIVLPLGSLNIGLSRHRALLFKVLADNINMPCRLVKGSHYTGVEDDAVNIIKLEDEREFLVDLMAAPGTLIPADILSTKDSAFKPYNPKIWPSLPSTKDNEFSYSRPIQPSHGEGSSQNSVVKDYSLPWNGKPYFEKSEPSNLGLSRDSGVGPSKIPNKGTPNQLENLPALSGTSLYKGTLGMNTVGDGTRLNVNVVPYTNNSPNDSRNLFADLNPFQIKGMGKAPVHNKPVENKPPELKSTKNNAVSGRPPVPLMWKNRHAYNEDPRKTNHNPNEYNPPLFVSNGSSMSEIIDLSSSKPLYNSNINNDVNAQTLAQVTGSVSPPNHDQRNCTYDRFMGSNLKLKDPESPSSSIDSITNRVDQILDDVDVGECEIPWEDLVLGERIGIGSYGEVYHADWNGTEVAVKKFLDQDFSGAALSEFKREVRIMRRLRHPNIVLFMGAVTRPPNLSIISEYLPRGSLYRILHRPNCQIDEKRRIKMALDVARGMNCLHTSTPTIVHRDLKSPNLLVDKNWNVKVCDFGLSRLKHNTFLSSKSTAGTPEWMAPEVLRNEPSNEKCDVYSFGVILWELATLRLPWSGMNPMQVVGAVGFQNRRLDIPKEVDPIVARIIWECWQQDPNLRPSFAQLTVALKPLQRLVIPSYQDQLAPPMPQEISVNSTP*

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