SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G08720 | AT | Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein | chr1:2774089-2779077 FORWARD LENGTH=933 | SoyBase | E_val: 0 | ISS |
| GO:0000165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: MAPK cascade | SoyBase | N/A | ISS |
| GO:0002229 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to oomycetes | SoyBase | N/A | ISS |
| GO:0006487 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation | SoyBase | N/A | ISS |
| GO:0008219 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell death | SoyBase | N/A | ISS |
| GO:0009414 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to water deprivation | SoyBase | N/A | ISS |
| GO:0009617 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to bacterium | SoyBase | N/A | ISS |
| GO:0009620 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to fungus | SoyBase | N/A | ISS |
| GO:0009723 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus | SoyBase | N/A | ISS |
| GO:0009788 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of abscisic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0046777 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation | SoyBase | N/A | ISS |
| GO:1900150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of defense response to fungus | SoyBase | N/A | ISS |
| GO:1900424 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of defense response to bacterium | SoyBase | N/A | ISS |
| GO:2000031 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005769 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: early endosome | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0005802 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0004709 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: MAP kinase kinase kinase activity | SoyBase | N/A | ISS |
| GO:0004712 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine/tyrosine kinase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| KOG0192 | KOG | Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs | JGI | ISS | |
| PTHR23257 | Panther | SERINE-THREONINE PROTEIN KINASE | JGI | ISS | |
| PTHR23257:SF80 | Panther | MAP3K DELTA-1 PROTEIN KINASE | JGI | ISS | |
| PF07714 | PFAM | Protein tyrosine kinase | JGI | ISS | |
| UniRef100_D2DF33 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: EDR1 n=1 Tax=Glycine max RepID=D2DF33_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233CC4A | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233CC4A related cluster n=1 Tax=unknown RepID=UPI000233CC4A | SoyBase | E_val: 0 | ISS |
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Glyma10g30070 not represented in the dataset |
Glyma10g30070 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g37330 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g159200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g30070.1 sequence type=CDS gene model=Glyma10g30070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTGAGAGAGTGAAGAAAGAAAAGCAAACGGGGGAGAAAAGGGAGAGGATGAAGAACATCTTCAAGAAGCTGCACATAGGTAGCAGCCACGATCCTCATCGATCCAATGAGGCTTCACCGTCTGTGCCGTCGCCGTCGTGCGTTGCCGATCAGTCCCAGAGCTCCGCCGCCACTCCGGCGAGTCCTTCGTCGGCGTCGGCGTCGGCGTCCACGGTGGTGGTGACTCCCGGAGGAGGAGGCGGCGGCGCGAGTCCGGTGATGAATCGGCAGGACTTTTTCTCGTCGGAGGAGGAGTTTCAGGTTCAGCTAGCCCTAGCTATCAGCGCTTCGAATTCGGAGTTCCGTGAGGATCCTGAGAAGGATCAGATCCACGCGGCGACGCTTTTGAGCTTGGGAGGCCATCGAATCGATTCGGCGCGGAACAAGGATGATGTGGCGGAGGCGCTGTCGAGGCAGTACTGGGAATATAATGTGCTTGACTATGAGGAGAAAGTGGTAGATGGTTTTTATGATGTATATGGGCCCTATAATGATTCAGTAATGCAAGGAAAGATGCCATCTCGAACAGATCTTGAAGCAAACCCTGGAGGTTCTGAGTTGGTCATTGTTAATCGAACAATTGATCCTTCTCTGGAGGAACTGATACAAATTGCACAATGCATTGCATTAGACTGCCCTGTCTCTAGTTTGGTACAAAGGCTTGCTGAACTTGTTACAAGTCATATGGGTGGTCCTGTAAAGGATGCTAGTATTATGTTAGCAAGATGGACAGAAACAAGAGCAGAGTTAAAGACATCTCTTCACACAATTGTATTGCCTCTTGGGTCCTTAAATATTGGGCTCTCTAGGCATCGTGCTTTGCTTTTCAAGGTATTAGCTGACAACATTAATATGCCTTGTAGACTGGTAAAAGGTAGTCATTACACTGGTGTCGAGGATGATGCTGTCAACATTATAAAGTTGGAGGATGAAAGGGAGTTTTTGGTTGATCTCATGGCTGCTCCAGGGACACTTATCCCAGCTGATATTTTAAGCACCAAGGATAGTGCCTTTAAGCCTTACAATCCCAAGATTTGGCCAAGTTTACCCTCCACTAAGGATAATGAATTTTCTTACTCAAGACCTATCCAACCATCTCATGGTGAAGGTAGTAGTCAAAATTCTGTGGTAAAAGATTATTCACTGCCCTGGAATGGAAAACCATATTTTGAGAAGTCAGAGCCTTCAAACTTAGGTTTGAGTAGAGACAGTGGCGTTGGTCCTTCTAAAATTCCTAATAAAGGGACTCCTAACCAACTAGAAAATTTGCCAGCCTTGTCTGGTACTTCTCTGTACAAAGGGACTCTTGGAATGAATACAGTTGGTGATGGGACAAGATTGAATGTCAATGTTGTACCATATACTAATAACAGCCCCAATGACTCTCGGAACCTTTTTGCAGATCTTAACCCATTCCAAATAAAAGGAATGGGGAAGGCCCCTGTGCATAACAAACCTGTGGAAAATAAACCTCCTGAGCTTAAAAGTACTAAAAACAATGCTGTTTCTGGTCGACCCCCAGTGCCACTGATGTGGAAGAATCGTCATGCTTACAATGAAGACCCCAGGAAAACTAATCATAATCCTAATGAATACAACCCTCCCTTATTTGTTTCCAATGGTTCTTCTATGTCTGAAATTATTGACCTTAGTAGTTCCAAGCCGTTGTATAATTCAAATATAAATAATGATGTAAATGCTCAAACTTTGGCGCAAGTTACTGGTTCAGTTTCACCACCTAATCATGACCAGAGGAACTGTACATATGACAGATTCATGGGAAGCAATTTGAAATTAAAAGATCCAGAGAGTCCTAGCTCATCAATTGATTCCATCACAAACAGGGTTGATCAAATATTGGATGATGTAGATGTTGGTGAATGCGAGATTCCATGGGAGGATCTGGTTCTTGGTGAAAGAATTGGTATAGGTTCATATGGAGAGGTATACCATGCTGACTGGAATGGCACGGAGGTTGCTGTGAAGAAATTTTTGGATCAGGATTTTTCAGGCGCTGCATTATCAGAATTCAAAAGAGAAGTGCGGATAATGCGTAGGCTACGTCATCCAAATATTGTTCTTTTTATGGGTGCTGTTACTCGTCCTCCCAATCTGTCAATCATTTCAGAGTATCTACCAAGAGGAAGCTTGTACCGAATTCTTCATCGCCCTAATTGTCAGATTGATGAGAAACGAAGAATAAAAATGGCTCTGGATGTGGCTAGGGGCATGAATTGCTTACACACCAGCACACCTACAATTGTTCATCGAGATCTAAAGTCTCCAAATCTTTTGGTTGATAAGAACTGGAATGTTAAGGTATGTGATTTTGGGTTGTCACGGTTGAAGCACAACACTTTTTTGTCATCCAAGTCAACTGCTGGAACGCCGGAATGGATGGCTCCTGAAGTTCTCCGCAATGAGCCCTCAAATGAGAAATGCGATGTTTATAGTTTTGGAGTCATCTTATGGGAGCTTGCCACTCTAAGGTTGCCGTGGAGTGGAATGAATCCTATGCAAGTTGTTGGTGCCGTTGGTTTCCAAAACCGTAGACTTGATATTCCTAAGGAAGTCGATCCTATAGTTGCAAGAATAATCTGGGAGTGTTGGCAACAGGATCCAAATTTGCGGCCCTCGTTTGCGCAACTCACAGTGGCTCTAAAGCCTCTACAGCGTCTGGTTATCCCATCTTATCAAGATCAGTTAGCTCCACCTATGCCGCAGGAGATTTCTGTAAATTCCACCCCCTGA
>Glyma10g30070.1 sequence type=predicted peptide gene model=Glyma10g30070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSERVKKEKQTGEKRERMKNIFKKLHIGSSHDPHRSNEASPSVPSPSCVADQSQSSAATPASPSSASASASTVVVTPGGGGGGASPVMNRQDFFSSEEEFQVQLALAISASNSEFREDPEKDQIHAATLLSLGGHRIDSARNKDDVAEALSRQYWEYNVLDYEEKVVDGFYDVYGPYNDSVMQGKMPSRTDLEANPGGSELVIVNRTIDPSLEELIQIAQCIALDCPVSSLVQRLAELVTSHMGGPVKDASIMLARWTETRAELKTSLHTIVLPLGSLNIGLSRHRALLFKVLADNINMPCRLVKGSHYTGVEDDAVNIIKLEDEREFLVDLMAAPGTLIPADILSTKDSAFKPYNPKIWPSLPSTKDNEFSYSRPIQPSHGEGSSQNSVVKDYSLPWNGKPYFEKSEPSNLGLSRDSGVGPSKIPNKGTPNQLENLPALSGTSLYKGTLGMNTVGDGTRLNVNVVPYTNNSPNDSRNLFADLNPFQIKGMGKAPVHNKPVENKPPELKSTKNNAVSGRPPVPLMWKNRHAYNEDPRKTNHNPNEYNPPLFVSNGSSMSEIIDLSSSKPLYNSNINNDVNAQTLAQVTGSVSPPNHDQRNCTYDRFMGSNLKLKDPESPSSSIDSITNRVDQILDDVDVGECEIPWEDLVLGERIGIGSYGEVYHADWNGTEVAVKKFLDQDFSGAALSEFKREVRIMRRLRHPNIVLFMGAVTRPPNLSIISEYLPRGSLYRILHRPNCQIDEKRRIKMALDVARGMNCLHTSTPTIVHRDLKSPNLLVDKNWNVKVCDFGLSRLKHNTFLSSKSTAGTPEWMAPEVLRNEPSNEKCDVYSFGVILWELATLRLPWSGMNPMQVVGAVGFQNRRLDIPKEVDPIVARIIWECWQQDPNLRPSFAQLTVALKPLQRLVIPSYQDQLAPPMPQEISVNSTP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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