Report for Sequence Feature Glyma10g29910
Feature Type: gene_model
Chromosome: Gm10
Start: 38656639
stop: 38659469
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma10g29910
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G27320 AT
Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein | chr5:9629254-9630746 FORWARD LENGTH=344
SoyBase E_val: 0 ISS
GO:0008152 GO-bp
Annotation by Michelle Graham. GO Biological Process: metabolic process
SoyBase N/A ISS
GO:0009723 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus
SoyBase N/A ISS
GO:0009737 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus
SoyBase N/A ISS
GO:0009739 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to gibberellin stimulus
SoyBase N/A ISS
GO:0009740 GO-bp
Annotation by Michelle Graham. GO Biological Process: gibberellic acid mediated signaling pathway
SoyBase N/A ISS
GO:0009845 GO-bp
Annotation by Michelle Graham. GO Biological Process: seed germination
SoyBase N/A ISS
GO:0009863 GO-bp
Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway
SoyBase N/A ISS
GO:0009867 GO-bp
Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway
SoyBase N/A ISS
GO:0009939 GO-bp
Annotation by Michelle Graham. GO Biological Process: positive regulation of gibberellic acid mediated signaling pathway
SoyBase N/A ISS
GO:0010162 GO-bp
Annotation by Michelle Graham. GO Biological Process: seed dormancy process
SoyBase N/A ISS
GO:0010325 GO-bp
Annotation by Michelle Graham. GO Biological Process: raffinose family oligosaccharide biosynthetic process
SoyBase N/A ISS
GO:0010476 GO-bp
Annotation by Michelle Graham. GO Biological Process: gibberellin mediated signaling pathway
SoyBase N/A ISS
GO:0042538 GO-bp
Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response
SoyBase N/A ISS
GO:0048444 GO-bp
Annotation by Michelle Graham. GO Biological Process: floral organ morphogenesis
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
GO:0016787 GO-mf
Annotation by Michelle Graham. GO Molecular Function: hydrolase activity
SoyBase N/A ISS
KOG1515
KOG
Arylacetamide deacetylase
JGI ISS
PTHR23024 Panther
MEMBER OF 'GDXG' FAMILY OF LIPOLYTIC ENZYMES
JGI ISS
PTHR23024:SF10 Panther
CARBOXYLESTERASE-RELATED
JGI ISS
PF07859 PFAM
alpha/beta hydrolase fold
JGI ISS
UniRef100_B9REZ1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Gibberellin receptor GID1, putative n=1 Tax=Ricinus communis RepID=B9REZ1_RICCO
SoyBase E_val: 0 ISS
UniRef100_I1LBF7 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LBF7_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma10g29910
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma10g29910
Paralog Evidence Comments
Glyma20g37430 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma10g29910 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.10g158000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma10g29910
Coding sequences of Glyma10g29910
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g29910.1 sequence type=CDS gene model=Glyma10g29910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTGGGAGTAACGAGCTTAACCCCAACGATTCTAAGATGGTGGTTCCGCTGAATATGTGGGTTCTGATCTCAAATTTCAAGTTGGCATACAATCTTCTTCGTCGCCCGGACGGTACTTTCAACCGGGACTTAGCAGAGTTCCTTGATCGGAAGGTTCCCGCAAATGCCAACCCTGTGGACAGAGTGTTCTCCTTTGATGTTGTTGTTGACCGTGAAACGAATCTTCTGACTCGAATCTATCGTCCTACTGAGGGAGAAGAACGTTCGGTGAACATTCTTGACCTTGAGAAGCCTGTGAGCTCTGAGGTTGTTCCTGTCATCATATTTTTCCATGGTGGAAGTTTTGCGCATTCTTCAGCCAATAGTGCTATATATGACACCCTTTGTCGTCGCCTAGTGGGTATCTGTAAGGCTGTTGTGGTGTCTGTGAACTATAGGCGTGCACCTGAGAATAGGTATCCCTGTGCATATGATGATGGGTGGACAGCTCTTAAGTGGGTTAGTTCTAGATCTTGGCTCCAGAGTAAGAAGGATAAGAAAGTTCATATCTACTTGGCTGGGGATAGCTCAGGTGGGAACATTGTGCACCATGTTGCCCTCAAGGCCGTGGAGTCGGGAATTGAAGTGTTTGGGAATATTCTGCTCAACCCATTGTTTGGTGGGCAAGAAAGAACCGAGTCTGAGAAGCGCTTAGATGGGAGGTATTTTGTTAGAGTTAAGGATCGAGACTGGTATTGGAGGGCTTTTCTTCCTGAAGGGGAAGATAGAGACCACCATGCATGCAACCCGTTTGGCCCCAAGGGGAAGAGTCTTGAAGGGATCACCTTTCCCAAGAGCCTTGTGGTGGTTGCTGGTTTAGACCTTGTTCAGGACTGGCAATTGGGTTATGCCAAAGGGCTTGAGAAGGCTGGCCAAGAAGTGAAATTGATTTTCCTGGAGCAAGCAACCATTGGGTTTTATTTGCTGCCAAACAATGAGCACTTCTCTCCTGTTATGGATGAGATAAAATATTTTGTCAGCTCTGACTGTTGA
Predicted protein sequences of Glyma10g29910
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma10g29910.1 sequence type=predicted peptide gene model=Glyma10g29910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAGSNELNPNDSKMVVPLNMWVLISNFKLAYNLLRRPDGTFNRDLAEFLDRKVPANANPVDRVFSFDVVVDRETNLLTRIYRPTEGEERSVNILDLEKPVSSEVVPVIIFFHGGSFAHSSANSAIYDTLCRRLVGICKAVVVSVNYRRAPENRYPCAYDDGWTALKWVSSRSWLQSKKDKKVHIYLAGDSSGGNIVHHVALKAVESGIEVFGNILLNPLFGGQERTESEKRLDGRYFVRVKDRDWYWRAFLPEGEDRDHHACNPFGPKGKSLEGITFPKSLVVVAGLDLVQDWQLGYAKGLEKAGQEVKLIFLEQATIGFYLLPNNEHFSPVMDEIKYFVSSDC*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
