SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G09830 | AT | Annotation by Michelle Graham. TAIR10: Glycinamide ribonucleotide (GAR) synthetase | chr1:3192783-3194936 REVERSE LENGTH=532 | SoyBase | E_val: 0 | ISS |
| GO:0006164 | GO-bp | Annotation by Michelle Graham. GO Biological Process: purine nucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0009113 | GO-bp | Annotation by Michelle Graham. GO Biological Process: purine nucleobase biosynthetic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004637 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphoribosylamine-glycine ligase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016874 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ligase activity | SoyBase | N/A | ISS |
| GO:0046872 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metal ion binding | SoyBase | N/A | ISS |
| PTHR10520 | Panther | PHOSPHORIBOSYLAMINE-GLYCINE LIGASE | JGI | ISS | |
| PF01071 | PFAM | Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain | JGI | ISS | |
| PF02843 | PFAM | Phosphoribosylglycinamide synthetase, C domain | JGI | ISS | |
| PF02844 | PFAM | Phosphoribosylglycinamide synthetase, N domain | JGI | ISS | |
| UniRef100_I1LBE7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Phosphoribosylamine--glycine ligase 2 n=1 Tax=Glycine max RepID=I1LBE7_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LBE7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Phosphoribosylamine--glycine ligase 2 n=1 Tax=Glycine max RepID=I1LBE7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma10g29780 not represented in the dataset |
Glyma10g29780 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g156900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g29780.2 sequence type=transcript gene model=Glyma10g29780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTTGAAGGGGCAAGGGAAAAACACAAGACGGCGCACATAGATTTTGTCGAAGAAACATCCGAGGAACAAGGTTCTGTGCAGAGCGGGACTGTGATTCAACGGGAGTAGAATGTCTTGCGCCACCTTCAATGTTGCAGCTTCTTTGAATCTTCATGGACGTACTAAGCAAGCAGTTTCTAAGCCATTTGGGTCAAGAAATCACTGTACTTTCCCCAAGTTTTCTTTTCTCTATTCTGAGACCTTGAATTTGAGCTCCACTTATTATAGTTTTGGCCGGGATACACCCTCACGCTCATTCCATAGTGTTTTTAAATGTCTTGCTCAGAATTCAGAATCATCACCTTCTGTTAGCGTTGACACAAACAACAATTCTCAAAAGGTGACTGTTCTGGTTATTGGTGGAGGGGGACGTGAACACGCTCTTTGCCATGCCTTGCAACGATCACCATCCTGTGAGACTGTACTTTGTGCCCCGGGCAATGCAGGGATTGCTAGCTCAGGAAATGCTACTTGCATCTCTGACCTTGAAGTTTATGATGGAGCAGCAGTAATCTCCTTTTGCCGGAAAATGGGGGTGGGACTTGTTGTTGTGGGACCTGAGGCTCCACTTGTTGCAGGTCTTACAAATGAGTTAGTTAAGGCTGGAATCCCAACTTTTGGTCCATCTGCAGAGGCTGCTGCTTTGGAAGGTTCTAAAAATTTCATGAAGCATTTGTGTGACAAGTATGATATTCCAACTGCCAAGTACAAAACATTTACTGACCCATCTGCTGCAAAGCAATATATACAAGAACAAGGAGCACCAATTGTCATCAAAGCAGATGGACTGGCTGCTGGAAAAGGAGTTACTGTTGCCATGACACTGGAAGAGGCAAATGAAGCTGTCGACTCAATGCTGGTGAAGGGTGATTTTGGTTCTGCAGGTTGTCGTGTCATTGTTGAGGAATTTCTAGAAGGAGAAGAAGCATCCTTTTTTGCATTGGTTGATGGAGAAAATGCAATTCCACTAGAATCTGCACAGGACCATAAACGAGTTGGTGATGGTGACACAGGGCCAAATACTGGTGGCATGGGTGCATATTCTCCAGCTCCTATAATAACTAAGGAACTTCAATCTATAGTAATGGATTCAATTATCATCCCGACAGTAAAAGGAATGTCAGCGGAAGGTTGCAAGTTTGTTGGGGTTTTATATGCTGGGCTTATGATTGAGAAGAAGTCTGGCATGCCTAAGTTAATTGAGTATAATGTGCGATTTGGTGATCCTGAGTGCCAGGTCTTAATGGTTCGGTTGGAGTCTGATTTGGTACAAGTTCTACTTTCAGCATGTAGAGGAGAGTTGAGTGGGTTATCACTGAACTGGTCTCCTGGGTCTGCCATGGTTGTGGTAATGGCAAGTAACGGATATCCTGGATCATATGAGAAGGGAACTGTGATTGAAAACCTTCAAGAAGCTGAGCTTGCTGCTCCAGGTATCAAGATATTTCATGCAGGAACTGCTTTTGACTCTGAAGGAAAATTTATTGCAATTGGGGGGCGTGTTCTTGGGGTTACAGCCAAGGGAAATGATCTTGAAGAGGCACGTGATCGAGCTTATCAAGCTGTTGAGAAAGTTAACTGGTCTGGAGGCTTCTATCGTCGGGATATTGGTTGGAGAGCCCTTCCTCAGAAACAATATGTTACAAAGGGATAAACTACAGCTGAGTCCTAGAACAGTAATAGACATTGGTCAACACTCATTAGTGGTAAATCGTTTTACAAACATTAGAAAGTCCCCAGTGTAAGAGGATGGATCTTGTCTTTTGTACTTTTCGGGTGTAACGGGATTAGGTAATGTGGTTACATCAAGAGCTATGGTGGGAAACCTCGTAAGAATAAACAATACTACCGCCCCTCCCATAAAAATATGGTGTATTTCTTCAATAAAAGTTAACTTATGTATTAAGATGTATGAAGCAAATCCTTACTCATGACTTTCTTATAGGTTGAAACTCAAATGCAGAGTTAAAACTTGCTTACTATATCTATTGACCCATGACCCATCCATTTTCAGTGTACTTCCATTGCTTCTTTAAGATTAGATTACTCAGTTAGTCTCTGTATCATTTAGAAAATATTAAACAAAAAAGTAAAAAGTCTTTATTACCATTTCAAAAGAAATC
>Glyma10g29780.1 sequence type=CDS gene model=Glyma10g29780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACGTACTAAGCAAGCAGTTTCTAAGCCATTTGGGTCAAGAAATCACTAATTCAGAATCATCACCTTCTGTTAGCGTTGACACAAACAACAATTCTCAAAAGGTGACTGTTCTGGTTATTGGTGGAGGGGGACGTGAACACGCTCTTTGCCATGCCTTGCAACGATCACCATCCTGTGAGACTGTACTTTGTGCCCCGGGCAATGCAGGGATTGCTAGCTCAGGAAATGCTACTTGCATCTCTGACCTTGAAGTTTATGATGGAGCAGCAGTAATCTCCTTTTGCCGGAAAATGGGGGTGGGACTTGTTGTTGTGGGACCTGAGGCTCCACTTGTTGCAGGTCTTACAAATGAGTTAGTTAAGGCTGGAATCCCAACTTTTGGTCCATCTGCAGAGGCTGCTGCTTTGGAAGGTTCTAAAAATTTCATGAAGCATTTGTGTGACAAGTATGATATTCCAACTGCCAAGTACAAAACATTTACTGACCCATCTGCTGCAAAGCAATATATACAAGAACAAGGAGCACCAATTGTCATCAAAGCAGATGGACTGGCTGCTGGAAAAGGAGTTACTGTTGCCATGACACTGGAAGAGGCAAATGAAGCTGTCGACTCAATGCTGGTGAAGGGTGATTTTGGTTCTGCAGGTTGTCGTGTCATTGTTGAGGAATTTCTAGAAGGAGAAGAAGCATCCTTTTTTGCATTGGTTGATGGAGAAAATGCAATTCCACTAGAATCTGCACAGGACCATAAACGAGTTGGTGATGGTGACACAGGGCCAAATACTGGTGGCATGGGTGCATATTCTCCAGCTCCTATAATAACTAAGGAACTTCAATCTATAGTAATGGATTCAATTATCATCCCGACAGTAAAAGGAATGTCAGCGGAAGGTTGCAAGTTTGTTGGGGTTTTATATGCTGGGCTTATGATTGAGAAGAAGTCTGGCATGCCTAAGTTAATTGAGTATAATGTGCGATTTGGTGATCCTGAGTGCCAGGTCTTAATGGTTCGGTTGGAGTCTGATTTGGTACAAGTTCTACTTTCAGCATGTAGAGGAGAGTTGAGTGGGTTATCACTGAACTGGTCTCCTGGGTCTGCCATGGTTGTGGTAATGGCAAGTAACGGATATCCTGGATCATATGAGAAGGGAACTGTGATTGAAAACCTTCAAGAAGCTGAGCTTGCTGCTCCAGGTATCAAGATATTTCATGCAGGAACTGCTTTTGACTCTGAAGGAAAATTTATTGCAATTGGGGGGCGTGTTCTTGGGGTTACAGCCAAGGGAAATGATCTTGAAGAGGCACGTGATCGAGCTTATCAAGCTGTTGAGAAAGTTAACTGGTCTGGAGGCTTCTATCGTCGGGATATTGGTTGGAGAGCCCTTCCTCAGAAACAATATGTTACAAAGGGATAA >Glyma10g29780.2 sequence type=CDS gene model=Glyma10g29780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTTGCGCCACCTTCAATGTTGCAGCTTCTTTGAATCTTCATGGACGTACTAAGCAAGCAGTTTCTAAGCCATTTGGGTCAAGAAATCACTGTACTTTCCCCAAGTTTTCTTTTCTCTATTCTGAGACCTTGAATTTGAGCTCCACTTATTATAGTTTTGGCCGGGATACACCCTCACGCTCATTCCATAGTGTTTTTAAATGTCTTGCTCAGAATTCAGAATCATCACCTTCTGTTAGCGTTGACACAAACAACAATTCTCAAAAGGTGACTGTTCTGGTTATTGGTGGAGGGGGACGTGAACACGCTCTTTGCCATGCCTTGCAACGATCACCATCCTGTGAGACTGTACTTTGTGCCCCGGGCAATGCAGGGATTGCTAGCTCAGGAAATGCTACTTGCATCTCTGACCTTGAAGTTTATGATGGAGCAGCAGTAATCTCCTTTTGCCGGAAAATGGGGGTGGGACTTGTTGTTGTGGGACCTGAGGCTCCACTTGTTGCAGGTCTTACAAATGAGTTAGTTAAGGCTGGAATCCCAACTTTTGGTCCATCTGCAGAGGCTGCTGCTTTGGAAGGTTCTAAAAATTTCATGAAGCATTTGTGTGACAAGTATGATATTCCAACTGCCAAGTACAAAACATTTACTGACCCATCTGCTGCAAAGCAATATATACAAGAACAAGGAGCACCAATTGTCATCAAAGCAGATGGACTGGCTGCTGGAAAAGGAGTTACTGTTGCCATGACACTGGAAGAGGCAAATGAAGCTGTCGACTCAATGCTGGTGAAGGGTGATTTTGGTTCTGCAGGTTGTCGTGTCATTGTTGAGGAATTTCTAGAAGGAGAAGAAGCATCCTTTTTTGCATTGGTTGATGGAGAAAATGCAATTCCACTAGAATCTGCACAGGACCATAAACGAGTTGGTGATGGTGACACAGGGCCAAATACTGGTGGCATGGGTGCATATTCTCCAGCTCCTATAATAACTAAGGAACTTCAATCTATAGTAATGGATTCAATTATCATCCCGACAGTAAAAGGAATGTCAGCGGAAGGTTGCAAGTTTGTTGGGGTTTTATATGCTGGGCTTATGATTGAGAAGAAGTCTGGCATGCCTAAGTTAATTGAGTATAATGTGCGATTTGGTGATCCTGAGTGCCAGGTCTTAATGGTTCGGTTGGAGTCTGATTTGGTACAAGTTCTACTTTCAGCATGTAGAGGAGAGTTGAGTGGGTTATCACTGAACTGGTCTCCTGGGTCTGCCATGGTTGTGGTAATGGCAAGTAACGGATATCCTGGATCATATGAGAAGGGAACTGTGATTGAAAACCTTCAAGAAGCTGAGCTTGCTGCTCCAGGTATCAAGATATTTCATGCAGGAACTGCTTTTGACTCTGAAGGAAAATTTATTGCAATTGGGGGGCGTGTTCTTGGGGTTACAGCCAAGGGAAATGATCTTGAAGAGGCACGTGATCGAGCTTATCAAGCTGTTGAGAAAGTTAACTGGTCTGGAGGCTTCTATCGTCGGGATATTGGTTGGAGAGCCCTTCCTCAGAAACAATATGTTACAAAGGGATAA
>Glyma10g29780.1 sequence type=predicted peptide gene model=Glyma10g29780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDVLSKQFLSHLGQEITNSESSPSVSVDTNNNSQKVTVLVIGGGGREHALCHALQRSPSCETVLCAPGNAGIASSGNATCISDLEVYDGAAVISFCRKMGVGLVVVGPEAPLVAGLTNELVKAGIPTFGPSAEAAALEGSKNFMKHLCDKYDIPTAKYKTFTDPSAAKQYIQEQGAPIVIKADGLAAGKGVTVAMTLEEANEAVDSMLVKGDFGSAGCRVIVEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPIITKELQSIVMDSIIIPTVKGMSAEGCKFVGVLYAGLMIEKKSGMPKLIEYNVRFGDPECQVLMVRLESDLVQVLLSACRGELSGLSLNWSPGSAMVVVMASNGYPGSYEKGTVIENLQEAELAAPGIKIFHAGTAFDSEGKFIAIGGRVLGVTAKGNDLEEARDRAYQAVEKVNWSGGFYRRDIGWRALPQKQYVTKG* >Glyma10g29780.2 sequence type=predicted peptide gene model=Glyma10g29780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSCATFNVAASLNLHGRTKQAVSKPFGSRNHCTFPKFSFLYSETLNLSSTYYSFGRDTPSRSFHSVFKCLAQNSESSPSVSVDTNNNSQKVTVLVIGGGGREHALCHALQRSPSCETVLCAPGNAGIASSGNATCISDLEVYDGAAVISFCRKMGVGLVVVGPEAPLVAGLTNELVKAGIPTFGPSAEAAALEGSKNFMKHLCDKYDIPTAKYKTFTDPSAAKQYIQEQGAPIVIKADGLAAGKGVTVAMTLEEANEAVDSMLVKGDFGSAGCRVIVEEFLEGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPIITKELQSIVMDSIIIPTVKGMSAEGCKFVGVLYAGLMIEKKSGMPKLIEYNVRFGDPECQVLMVRLESDLVQVLLSACRGELSGLSLNWSPGSAMVVVMASNGYPGSYEKGTVIENLQEAELAAPGIKIFHAGTAFDSEGKFIAIGGRVLGVTAKGNDLEEARDRAYQAVEKVNWSGGFYRRDIGWRALPQKQYVTKG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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