SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G05210 | AT | Annotation by Michelle Graham. TAIR10: nucleotide repair protein, putative | chr3:1479591-1481823 FORWARD LENGTH=410 | SoyBase | E_val: 7.00E-174 | ISS |
| GO:0000724 | GO-bp | Annotation by Michelle Graham. GO Biological Process: double-strand break repair via homologous recombination | SoyBase | N/A | ISS |
| GO:0000956 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process | SoyBase | N/A | ISS |
| GO:0006281 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA repair | SoyBase | N/A | ISS |
| GO:0006284 | GO-bp | Annotation by Michelle Graham. GO Biological Process: base-excision repair | SoyBase | N/A | ISS |
| GO:0006294 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleotide-excision repair, preincision complex assembly | SoyBase | N/A | ISS |
| GO:0010213 | GO-bp | Annotation by Michelle Graham. GO Biological Process: non-photoreactive DNA repair | SoyBase | N/A | ISS |
| GO:0010224 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to UV-B | SoyBase | N/A | ISS |
| GO:0010332 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to gamma radiation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003684 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: damaged DNA binding | SoyBase | N/A | ISS |
| GO:0004519 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: endonuclease activity | SoyBase | N/A | ISS |
| GO:0017108 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 5'-flap endonuclease activity | SoyBase | N/A | ISS |
| KOG2841 | KOG | Structure-specific endonuclease ERCC1-XPF, ERCC1 component | JGI | ISS | |
| PTHR12749 | Panther | EXCISION REPAIR CROSS-COMPLEMENTING 1 ERCC1 | JGI | ISS | |
| PF03834 | PFAM | Binding domain of DNA repair protein Ercc1 (rad10/Swi10) | JGI | ISS | |
| UniRef100_G7I805 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA excision repair protein ERCC-1 n=1 Tax=Medicago truncatula RepID=G7I805_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LBE3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LBE3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma10g29730 not represented in the dataset |
Glyma10g29730 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g37571 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g156300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g29730.2 sequence type=transcript gene model=Glyma10g29730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACACTCATCTTCGTTTTTAGAAGCCCAAGCCCATTTGACAGTAAGAAACAGAACCGTGAACTGAAAACCGAGTCTGAGCAAGTTCGCGCGAATTGACGAGGAAAACAGAGAAAGGAAGATGGAGAAGCAGAACGAAGAAGAAGAAGAGCAAAAGAAGAAGAAGAAGAGTTCGGTGGTGATAAGAATACCTTCTTATCAGGAAGTGGTTGAAAGTTCGCAGGCGAAATCCACTCCTTCGTCTCTCTTCGTTCCCTCCCAAACCTTTTCCGAAGCTTTCGCCTTCGTCAAATCCTCCGACTTCTACTCTCCTCCTCCGAAATCGAGGGAAACTGGTCAATCGGACGCTCCATCTTCAACATCGACACCATCTCCCGCTACTGCTGCAGCTTCGTCAACAATACCTTCCTCTCAAAATCGCAATTCAATTCTTGTCAGCCACAGACAGAAGGGAAATCCCTTGCTAAAACACATTAGGAACGTTAGATGGGCATTTGCTGATGTTGTTTGTGACTACATGCTTGGCCAAAGCTCCTGTGCTCTCTATCTCAGTCTTCGGTATCATCTTCTGCATCCAGACTACTTGTACTATAGAATAAGGGAGTTGCAGAAGAATTTCAAGCTTCGTGTGGTTTTATGCCATGTTGATGTGGAAGATGTAATAAAGCCTCTTCTTGAAGTTACAAAAACAGCTATGCTTCATGACTGTACACTCCTTTGTGGATGGAGCCTGGAGGAATGTGGCCGTTACTTGGAGACCATAAAAGTCTATGAAAACAAGCCTGCAGACATTATTCAAGGCCAAATGGATACAGATTATCTATCACGGCTTACTCATTCCCTTACAACTGTCCGACATGTTAACAAGACTGATGTAGTCACCCTTGGTACCACATTTGGGTCTCTTTCTAACATTATGGGTGCATCTATGGAAGATCTTGCTCGTTGCCCTGGCATAGGAGAGCGCAAGGTCAAGCGCTTGTTTGACACTTTTCATGAACCCTTCAAGCGTGTGGAATCCAGCCGGCAAGCCATTCCAGAGACTTCTGTCCAGAACAAGCCAGCTAGTCCAGAGTCATCGATCAGGAACAAAGCTGAATCTTCCTCCTTGATTGAAGACAAGCAAGAGGATACAGAAGATGTGAGCAAACGTAGGAAGAAAGAACCCGAAGTTACTGTCAAATCTGCCCTTTCTGCAGCTTTTGCCAAATATTCTGGTAGAGTTGGGAAGAGGAAAAGCACTTCACAAGTGGAGGAAAAAGAAGAATCAATTATTTCCAAAGAATCAGAAGCTGAAACATAAAGTTACCATGAAGTTTTTCACTGGTTCAATAATTTACCCTTAAACAATATAACCTCATGAGATTATTTAATCTCTATGCTTGTAAAGCCATGGAACTCTATTGGGAGTGTAAACGGGAAACATCTGTAACAAATGAAGAGGTAGTTAGGAGGCTTTAATCAAATGGGAAAGGAAGAGAAAGGAGAGGGGTGGGGTCATGTGGGTAATTGGGTATAACAACAAATTGATGGAAGATTAGATTTTCGGTTGTTGAGAATTGAGATAAGTTGGGAGGGAGAGTTAGGACCTTTGCAATTCTTGATTTGAGTGATATTCTCATCTTTGTACATTCTGTCTACCTCGTTTTCTTGATTCTGAAACCGCATTGCGATTTTTTGTTTAATGTTTCTATTAGTTCTAGCC
>Glyma10g29730.1 sequence type=CDS gene model=Glyma10g29730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGAAGCAGAACGAAGAAGAAGAAGAGCAAAAGAAGAAGAAGAAGAGTTCGGTGGTGATAAGAATACCTTCTTATCAGGAAGTGGTTGAAAGTTCGCAGGCGAAATCCACTCCTTCGTCTCTCTTCGTTCCCTCCCAAACCTTTTCCGAAGCTTTCGCCTTCGTCAAATCCTCCGACTTCTACTCTCCTCCTCCGAAATCGAGGGAAACTGGTCAATCGGACGCTCCATCTTCAACATCGACACCATCTCCCGCTACTGCTGCAGCTTCGTCAACAATACCTTCCTCTCAAAATCGCAATTCAATTCTTGTCAGCCACAGACAGTGTATTATTTTGCAGAAGGGAAATCCCTTGCTAAAACACATTAGGAACGTTAGATGGGCATTTGCTGATGTTGTTTGTGACTACATGCTTGGCCAAAGCTCCTGTGCTCTCTATCTCAGTCTTCGGTATCATCTTCTGCATCCAGACTACTTGTACTATAGAATAAGGGAGTTGCAGAAGAATTTCAAGCTTCGTGTGGTTTTATGCCATGTTGATGTGGAAGATGTAATAAAGCCTCTTCTTGAAGTTACAAAAACAGCTATGCTTCATGACTGTACACTCCTTTGTGGATGGAGCCTGGAGGAATGTGGCCGTTACTTGGAGACCATAAAAGTCTATGAAAACAAGCCTGCAGACATTATTCAAGGCCAAATGGATACAGATTATCTATCACGGCTTACTCATTCCCTTACAACTGTCCGACATGTTAACAAGACTGATGTAGTCACCCTTGGTACCACATTTGGGTCTCTTTCTAACATTATGGGTGCATCTATGGAAGATCTTGCTCGTTGCCCTGGCATAGGAGAGCGCAAGGTCAAGCGCTTGTTTGACACTTTTCATGAACCCTTCAAGCGTGTGGAATCCAGCCGGCAAGCCATTCCAGAGACTTCTGTCCAGAACAAGCCAGCTAGTCCAGAGTCATCGATCAGGAACAAAGCTGAATCTTCCTCCTTGATTGAAGACAAGCAAGAGGATACAGAAGATGTGAGCAAACGTAGGAAGAAAGAACCCGAAGTTACTGTCAAATCTGCCCTTTCTGCAGCTTTTGCCAAATATTCTGGTAGAGTTGGGAAGAGGAAAAGCACTTCACAAGTGGAGGAAAAAGAAGAATCAATTATTTCCAAAGAATCAGAAGCTGAAACATAA >Glyma10g29730.2 sequence type=CDS gene model=Glyma10g29730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGAAGCAGAACGAAGAAGAAGAAGAGCAAAAGAAGAAGAAGAAGAGTTCGGTGGTGATAAGAATACCTTCTTATCAGGAAGTGGTTGAAAGTTCGCAGGCGAAATCCACTCCTTCGTCTCTCTTCGTTCCCTCCCAAACCTTTTCCGAAGCTTTCGCCTTCGTCAAATCCTCCGACTTCTACTCTCCTCCTCCGAAATCGAGGGAAACTGGTCAATCGGACGCTCCATCTTCAACATCGACACCATCTCCCGCTACTGCTGCAGCTTCGTCAACAATACCTTCCTCTCAAAATCGCAATTCAATTCTTGTCAGCCACAGACAGAAGGGAAATCCCTTGCTAAAACACATTAGGAACGTTAGATGGGCATTTGCTGATGTTGTTTGTGACTACATGCTTGGCCAAAGCTCCTGTGCTCTCTATCTCAGTCTTCGGTATCATCTTCTGCATCCAGACTACTTGTACTATAGAATAAGGGAGTTGCAGAAGAATTTCAAGCTTCGTGTGGTTTTATGCCATGTTGATGTGGAAGATGTAATAAAGCCTCTTCTTGAAGTTACAAAAACAGCTATGCTTCATGACTGTACACTCCTTTGTGGATGGAGCCTGGAGGAATGTGGCCGTTACTTGGAGACCATAAAAGTCTATGAAAACAAGCCTGCAGACATTATTCAAGGCCAAATGGATACAGATTATCTATCACGGCTTACTCATTCCCTTACAACTGTCCGACATGTTAACAAGACTGATGTAGTCACCCTTGGTACCACATTTGGGTCTCTTTCTAACATTATGGGTGCATCTATGGAAGATCTTGCTCGTTGCCCTGGCATAGGAGAGCGCAAGGTCAAGCGCTTGTTTGACACTTTTCATGAACCCTTCAAGCGTGTGGAATCCAGCCGGCAAGCCATTCCAGAGACTTCTGTCCAGAACAAGCCAGCTAGTCCAGAGTCATCGATCAGGAACAAAGCTGAATCTTCCTCCTTGATTGAAGACAAGCAAGAGGATACAGAAGATGTGAGCAAACGTAGGAAGAAAGAACCCGAAGTTACTGTCAAATCTGCCCTTTCTGCAGCTTTTGCCAAATATTCTGGTAGAGTTGGGAAGAGGAAAAGCACTTCACAAGTGGAGGAAAAAGAAGAATCAATTATTTCCAAAGAATCAGAAGCTGAAACATAA
>Glyma10g29730.1 sequence type=predicted peptide gene model=Glyma10g29730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEKQNEEEEEQKKKKKSSVVIRIPSYQEVVESSQAKSTPSSLFVPSQTFSEAFAFVKSSDFYSPPPKSRETGQSDAPSSTSTPSPATAAASSTIPSSQNRNSILVSHRQCIILQKGNPLLKHIRNVRWAFADVVCDYMLGQSSCALYLSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVIKPLLEVTKTAMLHDCTLLCGWSLEECGRYLETIKVYENKPADIIQGQMDTDYLSRLTHSLTTVRHVNKTDVVTLGTTFGSLSNIMGASMEDLARCPGIGERKVKRLFDTFHEPFKRVESSRQAIPETSVQNKPASPESSIRNKAESSSLIEDKQEDTEDVSKRRKKEPEVTVKSALSAAFAKYSGRVGKRKSTSQVEEKEESIISKESEAET* >Glyma10g29730.2 sequence type=predicted peptide gene model=Glyma10g29730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEKQNEEEEEQKKKKKSSVVIRIPSYQEVVESSQAKSTPSSLFVPSQTFSEAFAFVKSSDFYSPPPKSRETGQSDAPSSTSTPSPATAAASSTIPSSQNRNSILVSHRQKGNPLLKHIRNVRWAFADVVCDYMLGQSSCALYLSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVIKPLLEVTKTAMLHDCTLLCGWSLEECGRYLETIKVYENKPADIIQGQMDTDYLSRLTHSLTTVRHVNKTDVVTLGTTFGSLSNIMGASMEDLARCPGIGERKVKRLFDTFHEPFKRVESSRQAIPETSVQNKPASPESSIRNKAESSSLIEDKQEDTEDVSKRRKKEPEVTVKSALSAAFAKYSGRVGKRKSTSQVEEKEESIISKESEAET*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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