SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G09210 | AT | Annotation by Michelle Graham. TAIR10: calreticulin 1b | chr1:2973217-2976655 REVERSE LENGTH=424 | SoyBase | E_val: 0 | ISS |
| GO:0006457 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein folding | SoyBase | N/A | ISS |
| GO:0006979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to oxidative stress | SoyBase | N/A | ISS |
| GO:0009408 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to heat | SoyBase | N/A | ISS |
| GO:0009627 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance | SoyBase | N/A | ISS |
| GO:0009644 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to high light intensity | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0034976 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress | SoyBase | N/A | ISS |
| GO:0042542 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0048046 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: apoplast | SoyBase | N/A | ISS |
| GO:0005509 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calcium ion binding | SoyBase | N/A | ISS |
| GO:0051082 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding | SoyBase | N/A | ISS |
| KOG0674 | KOG | Calreticulin | JGI | ISS | |
| PTHR11073 | Panther | CALRETICULIN AND CALNEXIN | JGI | ISS | |
| PF00262 | PFAM | Calreticulin family | JGI | ISS | |
| UniRef100_A0A762 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Calreticulin-1 n=1 Tax=Glycine max RepID=A0A762_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LB53 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LB53_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma10g28890 not represented in the dataset |
Glyma10g28890 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g23080 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g147600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g28890.2 sequence type=transcript gene model=Glyma10g28890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATTTCCAAATTTGTCCACTCCACTGAAAACCCAAAGCAAATTGATCCGCTATATAGAACAGGTAGCCTCACTCACTCAAATTCGAACTTCTCACGTTCATTTCTACACATCCCTAGCTCTGTCGTTCCGTCGTTGACGATGGCGTTTCGGGTGCGAAGCCCTGACCTCCGCTCTCTCTTTCTTCTCTCTCTCTTGTCCATCGCTTCCGCCAATGTCTTCTTCGAAGAGCGTTTCGATGACGGGTGGGAAAATCGATGGGTTAAATCAGATTGGAAAAAAGATGAGAACGTGGCTGGGGAGTGGAACCACACCTCTGGTCAATGGAATGGAGACGCTAATGACAAAGGTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACCCTGAATTCAGCAACAAGGGTAAGACACTAGTCTTTCAATTTTCTGTTAAGCACGAACAGAAGCTTGACTGTGGTGGTGGCTACATGAAGTTGCTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAGTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGCTATTCTTACCTACAATAACACAAACCACTTGATAAAGAAGGATGTTCCTTGTGAGACTGACCAACTTACTCATGTTTACACATTTATCCTCCGTCCGGATGCAACCTACAGCATCCTGATTGATAATGTGGAGAAGCAAACTGGTAGTCTCTACTCTGATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAACCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAGCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGAAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAGGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAGGAATCAAAGGATGACCCAGTTGACTCTGATGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACATGATGAACTCTAGGAAGTTTGCAAAACGGATAAAGAGTGAGCGGAAGTTATATTCCGGAAAGTTATATCTTTTTCAGTTGTAGTGTTTTTTTGTTTTTATTTTTCCCTAGATAAGCAGACCGTGGAAAACTGCAAGTGAAAGCTGGAGCTTTTGCTTCAATCACATTTGACTATTTCACTGATTAGAACAGGCAAAGATGTCTCTTTTGGGTTGATCTTTTTATGTTTCGATCAATTGAATTTTCCATTATGACACCGTCCTGAAAATCTAATTAATTGCAAAAAAGGATTATCTTTGTTAATCGTTTGCTAAGCTAGTTTGAGAGCTACTAGAAATTTTACTTGTCAAGTTATAATATGTGGCGCATGGTTGGCTA
>Glyma10g28890.1 sequence type=CDS gene model=Glyma10g28890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGTTTCGGGTGCGAAGCCCTGACCTCCGCTCTCTCTTTCTTCTCTCTCTCTTGTCCATCGCTTCCGCCAATGTCTTCTTCGAAGAGCGTTTCGATGACGGGTGGGAAAATCGATGGGTTAAATCAGATTGGAAAAAAGATGAGAACGTGGCTGGGGAGTGGAACCACACCTCTGGTCAATGGAATGGAGACGCTAATGACAAAGGTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACCCTGAATTCAGCAACAAGGGTAAGACACTAGTCTTTCAATTTTCTGTTAAGCACGAACAGAAGCTTGACTGTGGTGGTGGCTACATGAAGTTGCTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAGTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGCTATTCTTACCTACAATAACACAAACCACTTGATAAAGAAGGATGTTCCTTGTGAGACTGACCAACTTACTCATGTTTACACATTTATCCTCCGTCCGGATGCAACCTACAGCATCCTGATTGATAATGTGGAGAAGCAAACTGGTAGTCTCTACTCTGATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAACCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAGCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGAAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAGGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAGGAATCAAAGGATGACCCAGTTGACTCTGATGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACATGTAAGTTTTTCCATCCCCTTATCTCACTTTAATCAAACTTGGCATCAATGTATTTAA >Glyma10g28890.2 sequence type=CDS gene model=Glyma10g28890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGTTTCGGGTGCGAAGCCCTGACCTCCGCTCTCTCTTTCTTCTCTCTCTCTTGTCCATCGCTTCCGCCAATGTCTTCTTCGAAGAGCGTTTCGATGACGGGTGGGAAAATCGATGGGTTAAATCAGATTGGAAAAAAGATGAGAACGTGGCTGGGGAGTGGAACCACACCTCTGGTCAATGGAATGGAGACGCTAATGACAAAGGTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACCCTGAATTCAGCAACAAGGGTAAGACACTAGTCTTTCAATTTTCTGTTAAGCACGAACAGAAGCTTGACTGTGGTGGTGGCTACATGAAGTTGCTCAGTGGGGATGTTGATCAGAAGAAATTTGGCGGGGATACTCCTTACAGTATTATGTTTGGCCCAGATATCTGCGGTTACAGTACCAAGAAAGTTCACGCTATTCTTACCTACAATAACACAAACCACTTGATAAAGAAGGATGTTCCTTGTGAGACTGACCAACTTACTCATGTTTACACATTTATCCTCCGTCCGGATGCAACCTACAGCATCCTGATTGATAATGTGGAGAAGCAAACTGGTAGTCTCTACTCTGATTGGGATCTTCTCCCTCCAAAGACAATCAAGGATCCTGAGGCTAAAAAACCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAGCCTGAAGATTGGGATGATGAGGAAGATGGTGAGTGGACACCCCCTACCATTGCCAACCCTGAGTACAAGGGCCCATGGAAGGCAGAGAAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGATTTCAAGGATGACCCCGACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAGGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAGGAATCAAAGGATGACCCAGTTGACTCTGATGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACATGATGAACTCTAG
>Glyma10g28890.1 sequence type=predicted peptide gene model=Glyma10g28890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAFRVRSPDLRSLFLLSLLSIASANVFFEERFDDGWENRWVKSDWKKDENVAGEWNHTSGQWNGDANDKGIQTSEDYRFYAISAEYPEFSNKGKTLVFQFSVKHEQKLDCGGGYMKLLSGDVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNNTNHLIKKDVPCETDQLTHVYTFILRPDATYSILIDNVEKQTGSLYSDWDLLPPKTIKDPEAKKPEDWDDKEYIPDPEDKKPEGYDDIPKELPDPEAKKPEDWDDEEDGEWTPPTIANPEYKGPWKAEKIKNPNYKGKWKAPLIDNPDFKDDPDLYVFPNLKYVGIELWQVKSGTLFDNVLITDDPEYAKQLVEETWGKHKDAEKAAFEEAEKKREEEESKDDPVDSDADEEEEDADEAGNDSDAESKTEAGEDTKEEGVHVSFSIPLSHFNQTWHQCI* >Glyma10g28890.2 sequence type=predicted peptide gene model=Glyma10g28890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAFRVRSPDLRSLFLLSLLSIASANVFFEERFDDGWENRWVKSDWKKDENVAGEWNHTSGQWNGDANDKGIQTSEDYRFYAISAEYPEFSNKGKTLVFQFSVKHEQKLDCGGGYMKLLSGDVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNNTNHLIKKDVPCETDQLTHVYTFILRPDATYSILIDNVEKQTGSLYSDWDLLPPKTIKDPEAKKPEDWDDKEYIPDPEDKKPEGYDDIPKELPDPEAKKPEDWDDEEDGEWTPPTIANPEYKGPWKAEKIKNPNYKGKWKAPLIDNPDFKDDPDLYVFPNLKYVGIELWQVKSGTLFDNVLITDDPEYAKQLVEETWGKHKDAEKAAFEEAEKKREEEESKDDPVDSDADEEEEDADEAGNDSDAESKTEAGEDTKEEGVHDEL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
