Glyma10g28700 - SoyBase

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Report for Sequence Feature Glyma10g28700

Feature Type:	gene_model
Chromosome:	Gm10
Start:	37556152
stop:	37559743
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g28700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G09280	AT	Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763), Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT2G40760.1); Has 5925 Blast hits to 5912 proteins in 1592 species: Archae - 0; Bacteria - 2946; Metazoa - 156; Fungi - 408; Plants - 229; Viruses - 0; Other Eukaryotes - 2186 (source: NCBI BLink). \| chr1:2998209-3001253 REVERSE LENGTH=581	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2551	KOG	Phospholipase/carboxyhydrolase	JGI		ISS
PTHR18838	Panther	RHODANESE-LIKE DOMAIN-CONTAINING	JGI		ISS
PTHR18838:SF15	Panther	UNCHARACTERIZED	JGI		ISS
PF03959	PFAM	Serine hydrolase (FSH1)	JGI		ISS
UniRef100_Q94AC1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Rhodanese-like domain-containing protein 6 n=1 Tax=Arabidopsis thaliana RepID=STR6_ARATH	SoyBase	E_val: 0	ISS
UniRef100_UPI000233CDA0	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233CDA0 related cluster n=1 Tax=unknown RepID=UPI000233CDA0	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g28700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g28700

Paralog	Evidence	Comments
Glyma20g22830	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g28700 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g146100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g28700

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g28700

Limit To All Plant Sequences

>Glyma10g28700.1   sequence type=CDS   gene model=Glyma10g28700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCGAAGACAAGTACGGCGTGCTCCTCTATTACAAGTACGCCGAAATTCCCAACCTCGACGACCTCCTCACCTTCTACCACTCCAACTGCTCCTCCCTCAGCCTCCTCGGTCGTGTTCGCCTTTCTTCTCACGGCGTCAATGTCACCGTTGGCGGCAACTTATCCTCTCTCGGGAATCACATCCAAGCCCTCAAAGCCTACAGCACCTTGTTTCACCACACTGATTTCAAGCTCGCCACTTGTCATCATCCATTAAACGACAAAGTAGCCCAGGAATGTGGTTTCACTTCCCTCTCTATTCGAATCGTCCACGAACTTGTTACTCTCAGTTCCCATCCACTGTTAAAGTCACCGAATATCTCAAATGCCGGAAAGCATCTCTCTTCCCTCCACAATACCAACAGTGAGAGTCCCGAAAAAGGCCTTGTTTTACTTGATGCAAGGAATCTGTATGAAACAAGAATTGGCAAGTTTGATGTGCCAAATGTTGAAACTTTGGATCCACAAGTTAGGCAGTTTAGTGATTTGTCCTCTTGGATAGATGACAATGGGGAGCGGTTGAAAGGAAAAAATATACTCATGTATTGTACTGGTGGAATCAGGTGTGAAATGGCATCGGCATATATTAGGTCAAAAGGTGCTGGGTTTGAGAATTTATTTGGTGGCATACAACGGTATTTGGAGCAATTCCCAGATGGTGGGTTTTTCAAAGGAAAAAATTTTGTTTTTGATCACCGGATATCAGTTGGAAGTTCAGATGCTAATGTTATTGGGACCTGTCTTATTTGTCAATGTTCATTTGATGATTACTCTTCTCGCTGCCGGTGTGCTTACTGCCGAATGCTTGTTTTGGTTTGTGGTAGTTGCCAGAATGAATCTACACAGTACGTTTGTGAGCTATGTCAGAAACAGGGAAAGGCCGTTAGGTCAACACAATTAATTGAAAATGGTGAATCAAAAACATCATTGCCAGGTGTTGAATTCCAGAATTTTTCTTCAGATACTACTATGTGTTTGCCTCAAGTGCCTAGGGGAGATGATCCAAGGACCTCAAGAAAACTGAGAATATTGTGCTTGCATGGGTTCCGACAGAATGCATCCAGTTTCAAAGGCAGAACAGCATCACTAGCCAAGAAACTCAAGAAAATGACTGAATTTGTTTTTATCGACGCACCTCATGAATTGCCATTCATTTACCAAACCCCCATGCCTGAGCTCAATGTGAATTGTGCATCGTCATCGCCACCTAGTCCTCCTCCACCTTTGGATAATTGCAAGAAGAAGTTTGCATGGTTTGTGGCACCCAACTTTGATGGAAGTAGTGCTGCTGACTGGAAGGTAGCAGATGGTCCATTTGATCCACTTCAATACCAGCAGCAAACTAATGGATATGATATTTCGGTATCACACTTGAAGAATGTGTTTTCCCAAGAAGGACCATTTGATGGAATCTTGGGATTTTCACAGGGAGCAGCAATGACTGCCTTGATCTCTGCACAACAAGAAAAGCTGAAAGGTGAAATGGACTTTAAATTTGTAGTCCTGTGCTCTGGCTTTGCCCTCCGGATGAAGGAGATGGAGTGTGGCCCTATCAAGTGCCCTTCTCTTCATATTTTTGGTAATGAACATGGTAAAGACAGACAGATAGCTAACCAAGCTAGCAAGGAACTTGCTTCTCTATATGATAGTGATTGTTCTGCGATCGTTGAGCATGATTGTGGTCATATAATTCCTACCCGGTCCCCTTACATAGATGAGATCAAGGATTTCCTTGGGCGTTTTCTGTAG

Predicted protein sequences of Glyma10g28700

Limit To All Plant Sequences

>Glyma10g28700.1   sequence type=predicted peptide   gene model=Glyma10g28700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSEDKYGVLLYYKYAEIPNLDDLLTFYHSNCSSLSLLGRVRLSSHGVNVTVGGNLSSLGNHIQALKAYSTLFHHTDFKLATCHHPLNDKVAQECGFTSLSIRIVHELVTLSSHPLLKSPNISNAGKHLSSLHNTNSESPEKGLVLLDARNLYETRIGKFDVPNVETLDPQVRQFSDLSSWIDDNGERLKGKNILMYCTGGIRCEMASAYIRSKGAGFENLFGGIQRYLEQFPDGGFFKGKNFVFDHRISVGSSDANVIGTCLICQCSFDDYSSRCRCAYCRMLVLVCGSCQNESTQYVCELCQKQGKAVRSTQLIENGESKTSLPGVEFQNFSSDTTMCLPQVPRGDDPRTSRKLRILCLHGFRQNASSFKGRTASLAKKLKKMTEFVFIDAPHELPFIYQTPMPELNVNCASSSPPSPPPPLDNCKKKFAWFVAPNFDGSSAADWKVADGPFDPLQYQQQTNGYDISVSHLKNVFSQEGPFDGILGFSQGAAMTALISAQQEKLKGEMDFKFVVLCSGFALRMKEMECGPIKCPSLHIFGNEHGKDRQIANQASKELASLYDSDCSAIVEHDCGHIIPTRSPYIDEIKDFLGRFL*

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