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Report for Sequence Feature Glyma10g28671

Feature Type:gene_model
Chromosome:Gm10
Start:37528410
stop:37533947
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g28671
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G09320AT Annotation by Michelle Graham. TAIR10: agenet domain-containing protein | chr1:3010270-3012228 REVERSE LENGTH=517 SoyBaseE_val: 1.00E-22ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009688GO-bp Annotation by Michelle Graham. GO Biological Process: abscisic acid biosynthetic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
PF05641PFAM Agenet domain JGI ISS
UniRef100_B6U6Y1UniRef Annotation by Michelle Graham. Most informative UniRef hit: RNA binding protein n=1 Tax=Zea mays RepID=B6U6Y1_MAIZE SoyBaseE_val: 2.00E-21ISS
UniRef100_UPI000233CD9EUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233CD9E related cluster n=1 Tax=unknown RepID=UPI000233CD9E SoyBaseE_val: 5.00E-74ISS

Expression Patterns of Glyma10g28671
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g28671 not represented in the dataset
Glyma10g28671 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g28671
ParalogEvidenceComments
Glyma20g22810 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g28671 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g145800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g28671
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma10g28671
>Glyma10g28671.2   sequence type=transcript   gene model=Glyma10g28671   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCGTCTTCTCAGTTCTGTCCAAGGGATTCTTATTCACATGTCTCCCCTTATTCTCGGTTACTGTCATTCCTAACTTAACTTCCCATTAATTGTTATTATAGGTTTCTTGTGGCTATATTTTTTCATAATCATTACTGTTTCAGAGGGAGTTACATGAATGGATATAACGTTACTCATGTAATATTGGGTAATGGTGAATCAAAGAGAGTGTTGTTGACACCGAAAGTGAAATCAGTTGAAACTGTGAAGGGGAATGAGATTGGTGTGGGGGCAATAGTTGAGGTTAGCAGTGACAGTGGAGCTTGGTTTGCTGCTACTGTTGTTAAGGTAGTGAGGAAGGACAAGTTCCTTGTTGAGTATCATGGTCTGTTGGCTGATGATGATTCCCAGCTTAGAGAAGAGATTGATGTTCTGCACATTAGGCCTCATCCACCGGATGCTGATGTTGATGGTCAATTCAGTCTTCTTGATGAACTTGATGCTTTCTACAATGATGGTTGGTGGGTTGGTGTGATTTCTAAGGCTCTTGCTGATTTCAAGGTATGTAGTTTACTTTAGGTCTTCTAATGAAGAACTAGAGTTTGAGCACTCGCAGTTGAGGCTGCACCAGGATTGGATTGGTGGCAAATGGGTCATGCCTTGTAAGGTGTCCTCTTGCTCTTTCTTACAGCTATATCAATTTTTAAGAAAGTGATTCGGTGAAGTGGAAAAACACGTATTTACCCAGTGACTGCTTGCTTTACAACTGTTGGATAAAGATTGGATGGCTTAGATTATAAATGGCGTTTTGAATTTGGTAAATATTAGTCATTTGATACTCATCCAACGGTTACAATTTGCTGATTGGATGAATGCATGTTATTGACTCCAAACAATTTGGTGGGAA
Coding sequences of Glyma10g28671
>Glyma10g28671.1   sequence type=CDS   gene model=Glyma10g28671   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGGATATAACGTTACTCATGTAATATTGGGTAATGGTGAATCAAAGAGAGTGTTGTTGACACCGAAAGTGAAATCAGTTGAAACTGTGAAGGGGAATGAGATTGGTGTGGGGGCAATAGTTGAGGTTAGCAGTGACAGTGGAGCTTGGTTTGCTGCTACTGTTGTTAAGGTAGTGAGGAAGGACAAGTTCCTTGTTGAGTATCATGGTCTGTTGGCTGATGATGATTCCCAGCTTAGAGAAGAGATTGATGTTCTGCACATTAGGCCTCATCCACCGGATGCTGATGTTGATGGTCAATTCAGTCTTCTTGATGAACTTGATGCTTTCTACAATGATGGTTGGTGGGTTGGTGTGATTTCTAAGGCTCTTGCTGATTTCAAGGTATGTAGTTTACTTTAG

>Glyma10g28671.2   sequence type=CDS   gene model=Glyma10g28671   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGGATATAACGTTACTCATGTAATATTGGGTAATGGTGAATCAAAGAGAGTGTTGTTGACACCGAAAGTGAAATCAGTTGAAACTGTGAAGGGGAATGAGATTGGTGTGGGGGCAATAGTTGAGGTTAGCAGTGACAGTGGAGCTTGGTTTGCTGCTACTGTTGTTAAGGTAGTGAGGAAGGACAAGTTCCTTGTTGAGTATCATGGTCTGTTGGCTGATGATGATTCCCAGCTTAGAGAAGAGATTGATGTTCTGCACATTAGGCCTCATCCACCGGATGCTGATGTTGATGGTCAATTCAGTCTTCTTGATGAACTTGATGCTTTCTACAATGATGGTTGGTGGGTTGGTGTGATTTCTAAGGCTCTTGCTGATTTCAAGGTATGTAGTTTACTTTAG
Predicted protein sequences of Glyma10g28671
>Glyma10g28671.1   sequence type=predicted peptide   gene model=Glyma10g28671   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNGYNVTHVILGNGESKRVLLTPKVKSVETVKGNEIGVGAIVEVSSDSGAWFAATVVKVVRKDKFLVEYHGLLADDDSQLREEIDVLHIRPHPPDADVDGQFSLLDELDAFYNDGWWVGVISKALADFKVCSLL*

>Glyma10g28671.2   sequence type=predicted peptide   gene model=Glyma10g28671   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNGYNVTHVILGNGESKRVLLTPKVKSVETVKGNEIGVGAIVEVSSDSGAWFAATVVKVVRKDKFLVEYHGLLADDDSQLREEIDVLHIRPHPPDADVDGQFSLLDELDAFYNDGWWVGVISKALADFKVCSLL*






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