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Report for Sequence Feature Glyma10g28661

Feature Type:gene_model
Chromosome:Gm10
Start:37517773
stop:37519355
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g28661
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G56570AT Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:21195804-21197721 FORWARD LENGTH=611 SoyBaseE_val: 6.00E-125ISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0009749GO-bp Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus SoyBaseN/AISS
GO:0050832GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR24015Panther FAMILY NOT NAMED JGI ISS
PTHR24015:SF4Panther SUBFAMILY NOT NAMED JGI ISS
PF01535PFAM PPR repeat JGI ISS
UniRef100_G7I9I3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7I9I3_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233CD9EUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233CD9E related cluster n=1 Tax=unknown RepID=UPI000233CD9E SoyBaseE_val: 0ISS

Expression Patterns of Glyma10g28661
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g28661 not represented in the dataset
Glyma10g28661 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g28661
ParalogEvidenceComments
Glyma20g22800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g28661 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g145700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g28661
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g28661
>Glyma10g28661.1   sequence type=CDS   gene model=Glyma10g28661   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGCATGGAGTGTGTTTCCTCAAATGCTCAGAGATGGGGTGAACCCCACTGCTTTCACCATATCATCTTTTTTGAAGGCCTCTTTAGTTCATGCTTTGGCCTTCAAGATTGGTGTCCAAGGATCATCCATATATATTGATAATGCACTTATGGATATGTATGCCACTTGTTGCAATAGGATGGATCATGCAAGGATGGTTTTCGATGATATCACAACCAAGACTGATGATGAAGGAGCGTTAAGTCTCTTCAGCTTCTCAATTGCAGCTAAAGCTTGTGCATCAATTGGATCGGGTATTTTGGGCAAGCAGGTAAATGCTGCAGTGGTTAAGCATGGATTTGAGTCCAACCTTCCTGTCATGAATTCCATACTGGACATGTACTGCAAGTGTCATTGTGCATCTGAGGAAAAACAATTATTCTCTGAAATGACTCATAAAGATACCATCACATGGAATACCTTGATAGCTGGATTTGAAGCATTGGATTCCAGAGAGTCTCTCTGCATATTTTCTGCAGTAGGTGCATGTGCTAACTTAGCAGTTCTGTATTGTGGGCAACAGCTTCATGGTGTAATTGTTCATAGAGGCCTGGATAACTTAGAAATATCCAATGCGCTTATTTATATGTATGCTAAGTGTGGAAATATAGCTGATTCACATAACATATTTAGCAAAATGCTATGCACAAATTTATCAGGTATTAAACCAGATAAGATGGTATTTATGGCAGTTCTAAGTGCTTGTAGCCATACTGGACTAGTGGACGAAGGGATGAGATATTTTATATTAATGACCAGCTATTATGATGTAACCCCTGATATAGAGGTATATGAATGTGTGGTTGATTTGCTTGGACGTGCTGGAAGAGTAAAGGAAGCTTATCAACTAATAGAGAGTATGCCATTTAATCCAAATGAGTCTATCTGGGCAGCCCTTCTTGGAGCTTGTAAAGTGCATAAACAACCCACTCTGGATATGAAGCCAAATAGTGCAGGAACTTATGCGTTGTTATCAAATATTTATGCTGCTGAAGGAAACTGGGCTGATTTTGCCAGCTCAACGAAGTTGAGAAGTATTAAAAATAAAAACCAGGTTTGCAGTTTTGTTGTTGGAGATAGATTTGTCTCTTCCAATGAACAGGTGTGTGTGTGA
Predicted protein sequences of Glyma10g28661
>Glyma10g28661.1   sequence type=predicted peptide   gene model=Glyma10g28661   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSAWSVFPQMLRDGVNPTAFTISSFLKASLVHALAFKIGVQGSSIYIDNALMDMYATCCNRMDHARMVFDDITTKTDDEGALSLFSFSIAAKACASIGSGILGKQVNAAVVKHGFESNLPVMNSILDMYCKCHCASEEKQLFSEMTHKDTITWNTLIAGFEALDSRESLCIFSAVGACANLAVLYCGQQLHGVIVHRGLDNLEISNALIYMYAKCGNIADSHNIFSKMLCTNLSGIKPDKMVFMAVLSACSHTGLVDEGMRYFILMTSYYDVTPDIEVYECVVDLLGRAGRVKEAYQLIESMPFNPNESIWAALLGACKVHKQPTLDMKPNSAGTYALLSNIYAAEGNWADFASSTKLRSIKNKNQVCSFVVGDRFVSSNEQVCV*






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