Glyma10g28640 - SoyBase

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Report for Sequence Feature Glyma10g28640

Feature Type:	gene_model
Chromosome:	Gm10
Start:	37509189
stop:	37513188
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g28640

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G56560	AT	Annotation by Michelle Graham. TAIR10: Plant neutral invertase family protein \| chr1:21192593-21194948 FORWARD LENGTH=616	SoyBase	E_val: 0	ISS
GO:0005987	GO-bp	Annotation by Michelle Graham. GO Biological Process: sucrose catabolic process	SoyBase	N/A	ISS
GO:0042542	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide	SoyBase	N/A	ISS
GO:0048364	GO-bp	Annotation by Michelle Graham. GO Biological Process: root development	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004564	GO-mf	Annotation by Michelle Graham. GO Molecular Function: beta-fructofuranosidase activity	SoyBase	N/A	ISS
GO:0004575	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sucrose alpha-glucosidase activity	SoyBase	N/A	ISS
PF04853	PFAM	Plant neutral invertase	JGI		ISS
UniRef100_H6V7I6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Neutral/alkaline invertase n=1 Tax=Manihot esculenta RepID=H6V7I6_MANES	SoyBase	E_val: 0	ISS
UniRef100_I1LB29	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LB29_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g28640

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g28640

Paralog	Evidence	Comments
Glyma20g22780	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g28640 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g145600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g28640

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g28640

Limit To All Plant Sequences

>Glyma10g28640.1   sequence type=CDS   gene model=Glyma10g28640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACACAATTACCCTTATTCGCAACCGCGCCATTAATTCCGCTCGCAGGATTCTCACCGGTTCTAGAACTTCATTGTTTTTCGGGTCCACTCCTGCAAAATCTGACCACACTCTTTCCATTGCTAACAATTCGCTGAAACCTCGTTTCAATCATGACCGCGCCAATCACCACCCTTTTCAAATTCATCGCACAAAGGGTATTGATGTTGCTCAGAAAGTTTTTGGCTTACCCTCTTCGAATTTCGCCCCTCCATCTATGCATTTTAGTTTGAGCACATCGAGCAGGGACGTTTCCACCTTCAAGGTTCGAAATTTCTCGACCTCTGTTGAGACCCGCGTCAAGGACAACAACAATTTTGAGAGGATTTACGTACAGGGTGGCATGAACAATGTGAAACCATTGGTGGTGGAAAGTGTTCATAAGGAGGATGAGAGGGATTTGGGTGGTGATGTGAATGTGAGTGTGGGAAAGACTAAAGGGGAGGAGGACTCAGAGGTGGAAAAAGAAGCATGGAAGTTGTTGCAGGGTGCTGTTGTGACTTATTGTGGCAACCCTGTGGGAACTATGGCTGCAAATGATCCTGGGGACAAGATACCCTTGAATTATGATCAGGTCTTTATTAGGGATTTTATACCTTCAGCACTTGCTTTCTTGCTTAGAGGAGAAAGTGAGATTGTCAAGAACTTTCTTCTTCACACCTTGCAATTGCAGAGTTGGGAGAAAACGGTGGACTGCTACAGTCCAGGGCAGGGCTTGATGCCTGCAAGTTTCAAAGTTAGAACTGTTGCTCTTGATGAAGATAACCATGAAGAAGTTTTAGATCCTGATTTTGGGGAATCAGCTATTGGTCGTGTTGCACCTGTAGATTCAGGATTGTGGTGGATCATCCTCTTGCGGGCTTATGGGAAGCTCACTGGTGACTGCAGCTTGCAAGAAAGGGCGGATGTTCAAACAGGCTTAAAAATGATCCTTAACTTGTGTTTAACAGATGGGTTTGATATGTTTCCTTCTCTGTTAGTCACTGATGGGTCTTGCATGATAGACAGGCGGATGGGAATTCATGGTCACCCCCTTGAGATCCAAGCATTATTTTACTCAGCTCTTCGCTGCTCACGTGAGATGCTTGTTGCAACTGATGGAACCAATAATCTTATTAGAGCCATTAACAACAGACTCAGTGCACTGTCATTTCACATTAGAGAATATTATTGGGTGGATATGAAAAAGATGAATGAAATATACAGGTATAAAACTGAAGAGTACTCCACAGATGCCATCAACAAATTCAACATCTACCCAGAACAAATTCCATTGTGGTTAATGGATTGGATTCCTGAAGAAGGTGGGTATCTGATTGGGAATTTGCAGCCAGCTCACATGGACTTCCGGTTTTTCTCACTTGGAAATCTTTGGTCTATTGTCTCATCATTGGGCACCCCAAGACAGAACCAGGCTATTTTAAATCTGATAGAAGCAAAATGGGATGATCTTGTGGGCCATATGCCTCTTAAGATATGTTATCCTGCCTTGGATAATGAAGAGTGGCGCATAGTTACTGGTTGTGACCCAAAGAATACCCCTTGGTCATATCACAATGGTGGATCTTGGCCAACCCTTCTGTGGCAGTTCACACTGGCATGCATCAAAATGGGGAGAATTGAACTTGCCCAGAAAGCAGTTGCTTTGGCTGAGAAAAGACTGCCAGTTGATTCTTGGCCTGAATACTATGATACACGTACTGGAAAATTTATCGGAAAACAAGCCCGAATGTATCAAACATGGACCATAGCTGGTTTCCTTACATCCAAGATGCTTTTGAAGAATCCTGAGATGGCATCCATGTTATTCTGGGAGGAGGATTACGAGCTTCTTGACATATGTGTTTGTGGACTTAGCAAGAGTGGCAGGAAAAGGTGTTCCCGTGGTGCCGCAAGGTCTCAAATTCTTGTATGA

Predicted protein sequences of Glyma10g28640

Limit To All Plant Sequences

>Glyma10g28640.1   sequence type=predicted peptide   gene model=Glyma10g28640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNTITLIRNRAINSARRILTGSRTSLFFGSTPAKSDHTLSIANNSLKPRFNHDRANHHPFQIHRTKGIDVAQKVFGLPSSNFAPPSMHFSLSTSSRDVSTFKVRNFSTSVETRVKDNNNFERIYVQGGMNNVKPLVVESVHKEDERDLGGDVNVSVGKTKGEEDSEVEKEAWKLLQGAVVTYCGNPVGTMAANDPGDKIPLNYDQVFIRDFIPSALAFLLRGESEIVKNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRTVALDEDNHEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKLTGDCSLQERADVQTGLKMILNLCLTDGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQALFYSALRCSREMLVATDGTNNLIRAINNRLSALSFHIREYYWVDMKKMNEIYRYKTEEYSTDAINKFNIYPEQIPLWLMDWIPEEGGYLIGNLQPAHMDFRFFSLGNLWSIVSSLGTPRQNQAILNLIEAKWDDLVGHMPLKICYPALDNEEWRIVTGCDPKNTPWSYHNGGSWPTLLWQFTLACIKMGRIELAQKAVALAEKRLPVDSWPEYYDTRTGKFIGKQARMYQTWTIAGFLTSKMLLKNPEMASMLFWEEDYELLDICVCGLSKSGRKRCSRGAARSQILV*

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