SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma10g28631

Feature Type:gene_model
Chromosome:Gm10
Start:37503782
stop:37506597
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g28631
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G56590AT Annotation by Michelle Graham. TAIR10: Clathrin adaptor complexes medium subunit family protein | chr1:21202250-21204697 REVERSE LENGTH=415 SoyBaseE_val: 0ISS
GO:0006623GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole SoyBaseN/AISS
GO:0006810GO-bp Annotation by Michelle Graham. GO Biological Process: transport SoyBaseN/AISS
GO:0006886GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular protein transport SoyBaseN/AISS
GO:0009630GO-bp Annotation by Michelle Graham. GO Biological Process: gravitropism SoyBaseN/AISS
GO:0016192GO-bp Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport SoyBaseN/AISS
GO:0030244GO-bp Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process SoyBaseN/AISS
GO:0048193GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0030125GO-cc Annotation by Michelle Graham. GO Cellular Compartment: clathrin vesicle coat SoyBaseN/AISS
KOG2740 KOG Clathrin-associated protein medium chain JGI ISS
PTHR11998Panther CLATHRIN COAT ASSEMBLY PROTEIN JGI ISS
PTHR11998:SF4Panther MU-ADAPTIN 3A JGI ISS
PF00928PFAM Adaptor complexes medium subunit family JGI ISS
UniRef100_B9RFL9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Clathrin coat adaptor ap3 medium chain, putative n=1 Tax=Ricinus communis RepID=B9RFL9_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI000233C7D8UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233C7D8 related cluster n=1 Tax=unknown RepID=UPI000233C7D8 SoyBaseE_val: 0ISS

Expression Patterns of Glyma10g28631
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g28631 not represented in the dataset
Glyma10g28631 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g28631 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g145500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g28631
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g28631
>Glyma10g28631.1   sequence type=CDS   gene model=Glyma10g28631   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGCAGTGCATATTTCTCGTGTCAGATGCCGGAGAGGTAATGTTAGAGAAACAGCTCACGGGGCACCGCGTGGATCGCTCCATCTGTGCCTGGTTCTGGGAACAAGCCATTTCACTAGGCGACTCCTTCAAGCAACAACCGGTGATTGCTTCTCCTACGCATTATATTTTCCAAGTTTTTCGTGATGGAATCACTTTTTTGGGCTGCACGCAAGTTGAAATGCCACCCTTGATGGCCATTGAGTTCCTTTGTAGGGTAGCCAATGTCCTCAATGATTATTTTGGGGCCTTAAACGAGGACATAATTAAAGACAACTTTGTCATTGTGTACGAGCTGTTGGATGAGATGATAGACAATGGCTTCCCCTTAACTACAGAACCTAGTATCCTGCGAGAAATGATTACTCCGCCGAATATGGTTGACAAAGCCTTGAGCATCGTCACTGGTAGCAGTTCAAATGTGAGTGATACCCTTCCTGGGGCTGCAGCATCTTGTGTTCCCTGGAGAACGGCAGAGCCAAAGTACTCCAACAATGAAGTCTATGTAGACCTTGTTGAAGAAATGGATGCAATTATAAACAGGGACGGGGGTTTGGTGAAATGTGAGATCTATGGTGAAGTCCAAGTAAATTCCCGGATCTCAGGTTTTCCTGATTTAACCCTTTCATTTACAAATCCTTCCATCCTCAATGATGTGAGGTTCCATCCCTGTGTTCGTTTTCGGCCTTGGGAGTCTCATCAAATTCTTTCCTTTGTGCCTCCTGATGGACAATTTAAGCTTATGAGTTACAGAGTTAGAAAGTTGAAGAGCACCCCAATATATGTAAAGCCGCAGTTAACTTCAGATGGTGGGATATGCCGTGTTAGTGTATTGGCTGGAATAAGAAATGATCCTGGAAAGACAATTGATTCGGTTACTGTTCAGTTTCAGCTCCCTCCTTTCATCTTATCAGCTGATCTTACTTCAAATCATGGAACAGTGAACATCCTTGCTAAACAGACTTGCATATGGTCCATTGGTCGAATCCCAAAAGACAAAACCCCTTCCTTGTCTGGAACATTAGTGATTGAAACTGGATTGGAGCGCCTTCATGTCTTCCCTACATTTCAAGTGGGTTTTAGGATTATGGGTGTCGCCCTGTCTGGTCTGCAAATAGATAAACTGGATCTGAAGACTGTACCATACCGATTTTACAAAGGTTTTCGAGCTCTTACTCGGGCCGGAGAATTTGAAGTAAGATCATAA
Predicted protein sequences of Glyma10g28631
>Glyma10g28631.1   sequence type=predicted peptide   gene model=Glyma10g28631   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLQCIFLVSDAGEVMLEKQLTGHRVDRSICAWFWEQAISLGDSFKQQPVIASPTHYIFQVFRDGITFLGCTQVEMPPLMAIEFLCRVANVLNDYFGALNEDIIKDNFVIVYELLDEMIDNGFPLTTEPSILREMITPPNMVDKALSIVTGSSSNVSDTLPGAAASCVPWRTAEPKYSNNEVYVDLVEEMDAIINRDGGLVKCEIYGEVQVNSRISGFPDLTLSFTNPSILNDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVRKLKSTPIYVKPQLTSDGGICRVSVLAGIRNDPGKTIDSVTVQFQLPPFILSADLTSNHGTVNILAKQTCIWSIGRIPKDKTPSLSGTLVIETGLERLHVFPTFQVGFRIMGVALSGLQIDKLDLKTVPYRFYKGFRALTRAGEFEVRS*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo