Glyma10g28620 - SoyBase

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Report for Sequence Feature Glyma10g28620

Feature Type:	gene_model
Chromosome:	Gm10
Start:	37492336
stop:	37495822
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g28620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G09330	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF846, eukaryotic (InterPro:IPR008564); Has 518 Blast hits to 518 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 193; Fungi - 145; Plants - 73; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink). \| chr1:3013003-3014903	SoyBase	E_val: 1.00E-110	ISS
GO:0007030	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi organization	SoyBase	N/A	ISS
GO:0009306	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein secretion	SoyBase	N/A	ISS
GO:0009826	GO-bp	Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG3195	KOG	Uncharacterized membrane protein NPD008/CGI-148	JGI		ISS
PTHR13019	Panther	UNCHARACTERIZED	JGI		ISS
PF05832	PFAM	Eukaryotic protein of unknown function (DUF846)	JGI		ISS
UniRef100_G7I9I7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: FAM18-like protein, putative n=2 Tax=Medicago truncatula RepID=G7I9I7_MEDTR	SoyBase	E_val: 1.00E-121	ISS
UniRef100_I1LB26	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LB26_SOYBN	SoyBase	E_val: 2.00E-128	ISS

Expression Patterns of Glyma10g28620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g28620

Paralog	Evidence	Comments
Glyma20g22720	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g28620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g145400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g28620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g28620

Limit To All Plant Sequences

>Glyma10g28620.2   sequence type=transcript   gene model=Glyma10g28620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTCTTAGACGATAGAAACATGATTTTAGTGTATATTTTGTCAAGAGAATCCTATTTCGGTAAACTGTTATTTTCAGAACAATTTTATTTTTGAAGCACATGGGGTTTAAGTAGCAAATGTGAATGTGAGAATAGCAATTCCCTCAGAGGGAGCTAGCAGAATCCACTATCTCCAGGCCCATCCATCTCCAATACTAGTTCAACTAAAGCCCAATCCAGCCCAAAACGCTTTTGGTATACCATTTGCATTTCCATTGAAAGAAAAAAAAAAAGTCCCCTAACTCTCCATAGTACAACTTGGTACTTACAATACAAAGGGAAAAGAGTATAAGATCTGGTATGCTCTTGCTCCCACGTCTCTGATTGATTACTTGCAAGCTTCATCTGCACTCATGGATCCCAACCAGCCCGTGGGTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTCTTCAAGGCTGCAGCCTTGGCATTTTACATTCTCTCGGCCCTCTTTATTGATAACTTTGTCATCATTTTCGTGGTGACCGTTCTTCTTGCCGCCCTTGATTTTTGGGTAGTGAAGAATGTGAGTGGGCGAATTTTAGTTGGATTGAGGTGGTGGAATGAAATTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAGTCATTGGCTCGGATGAACAAGAAGGATTCATGGCTTTTCTGGTGGACCCTGTACCTTACGGCGGTTTTGTGGATACTGCTGGCAATATTCTCACTCATAAGGCTTCAAGCTGATTATCTCCTTGTTGTAGGAGTGTGTCTGACCCTCAGCATTGCAAATATTGTTGGTTTTACCAAATGCAAAAAAGATGCCAAGAAGCAGATTCAACAATTTGCCTCTCAGACAATTGCCTCTCGGTTCTCATCTACCTTACAGTCAGCATTCAGTGTTGTCTGATCGTCAAAGATGGAAATGCAAGTTGAACTGTTCAATTATTGAGATGCAGTGGAAGTTTGTACATGATTATTTCGGCCAGCATCGAATTGGATTTATCAAACTTGCATAGTTACTGATACAGCAAATGCAAAATTTTGTACTTTTTACATGAAATGGCTTGAATGAGACTTTGATGATCGAATTACTTAGTAAAACAGTTCTTTGTAGGTGTAAATCATGTTTTTTCTTGTATTCTTTTTACATCGATGGATTCGGATTTATATTCTGTATGTCAACAAATCTTTATGGCATATAATCAGAGGATATTGACTCATGGAAATTGAAGGATAATTATAAATTACGAAGTTGCATCGCACCGGTGACTGGTCACAAGA

Coding sequences of Glyma10g28620

Limit To All Plant Sequences

>Glyma10g28620.1   sequence type=CDS   gene model=Glyma10g28620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCCCAACCAGCCCGTGGGTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTCTTCAAGGCTGCAGCCTTGGCATTTTACATTCTCTCGGCCCTCTTTATTGATAACTTTGTCATCATTTTCGTGGTGACCGTTCTTCTTGCCGCCCTTGATTTTTGGGTAGTGAAGAATGTGAGTGGGCGAATTTTAGTTGGATTGAGGTGGTGGAATGAAATTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAGTCATTGGCTCGGATGAACAAGAAGGATTCATGGCTTTTCTGGTGGACCCTGTACCTTACGGCGGTTTTGTGGATACTGCTGGCAATATTCTCACTCATAAGGCTTCAAGCTGATTATCTCCTTGTTGTAGGAGTGTGTCTGACCCTCAGCATTGCAAATATTGTTGGTTTTACCAAATGCAAAAAAGATGCCAAGAAGCAGATTCAACAATTTGCCTCTCAGACAATTGCCTCTCGGTTCTCATCTACCTTACAGTCAGCATTCAGTGTTGTCTGA

>Glyma10g28620.2   sequence type=CDS   gene model=Glyma10g28620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCCCAACCAGCCCGTGGGTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTCTTCAAGGCTGCAGCCTTGGCATTTTACATTCTCTCGGCCCTCTTTATTGATAACTTTGTCATCATTTTCGTGGTGACCGTTCTTCTTGCCGCCCTTGATTTTTGGGTAGTGAAGAATGTGAGTGGGCGAATTTTAGTTGGATTGAGGTGGTGGAATGAAATTAATGATCTGGGTGAGAGTGTTTGGAAATTTGAATGTCTTGACCACGAGTCATTGGCTCGGATGAACAAGAAGGATTCATGGCTTTTCTGGTGGACCCTGTACCTTACGGCGGTTTTGTGGATACTGCTGGCAATATTCTCACTCATAAGGCTTCAAGCTGATTATCTCCTTGTTGTAGGAGTGTGTCTGACCCTCAGCATTGCAAATATTGTTGGTTTTACCAAATGCAAAAAAGATGCCAAGAAGCAGATTCAACAATTTGCCTCTCAGACAATTGCCTCTCGGTTCTCATCTACCTTACAGTCAGCATTCAGTGTTGTCTGA

Predicted protein sequences of Glyma10g28620

Limit To All Plant Sequences

>Glyma10g28620.1   sequence type=predicted peptide   gene model=Glyma10g28620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPNQPVGENYANPRTCFFHVLFKAAALAFYILSALFIDNFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEINDLGESVWKFECLDHESLARMNKKDSWLFWWTLYLTAVLWILLAIFSLIRLQADYLLVVGVCLTLSIANIVGFTKCKKDAKKQIQQFASQTIASRFSSTLQSAFSVV*

>Glyma10g28620.2   sequence type=predicted peptide   gene model=Glyma10g28620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPNQPVGENYANPRTCFFHVLFKAAALAFYILSALFIDNFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEINDLGESVWKFECLDHESLARMNKKDSWLFWWTLYLTAVLWILLAIFSLIRLQADYLLVVGVCLTLSIANIVGFTKCKKDAKKQIQQFASQTIASRFSSTLQSAFSVV*

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