Glyma10g28581 - SoyBase

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Report for Sequence Feature Glyma10g28581

Feature Type:	gene_model
Chromosome:	Gm10
Start:	37469154
stop:	37476915
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g28581

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G09380	AT	Annotation by Michelle Graham. TAIR10: nodulin MtN21 /EamA-like transporter family protein \| chr1:3026351-3029322 REVERSE LENGTH=374	SoyBase	E_val: 7.00E-141	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
KOG0070	KOG	GTP-binding ADP-ribosylation factor Arf1	JGI		ISS
PTHR11711	Panther	ARF-RELATED	JGI		ISS
PF00025	PFAM	ADP-ribosylation factor family	JGI		ISS
PF00892	PFAM	EamA-like transporter family	JGI		ISS
UniRef100_G7I8G0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Auxin-induced protein 5NG4 n=1 Tax=Medicago truncatula RepID=G7I8G0_MEDTR	SoyBase	E_val: 2.00E-147	ISS
UniRef100_I1LB15	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LB15_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g28581

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g28581 not represented in the dataset	Glyma10g28581 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g28581

Paralog	Evidence	Comments
Glyma20g22660	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g28581 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma10g28581

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g28581

Limit To All Plant Sequences

>Glyma10g28581.1   sequence type=CDS   gene model=Glyma10g28581   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAGTAGTGTTATTCCACTGTTGGCCATGATTATTGTACAATTGGGCTATGCAGGGATGAATATTACCTCAAAGCTTGCAATACAATCTGGCATGCACCCTCTTGTTCTCGTTGCTTATCGCCAAATTTTTGCAACTATTTCCCTTGCTCCCTTCGCTTTTTGGTTAGAACGGAATACGGCTCCCCGAATGACAAAGCACATTGCGTTCCAGATATTACTATCTTCCTTAACAGGAGTAACAGGAAATCAGATTCTATACTTCTTGGGGCTTAAATATTCAACCCCTACAATTGCATGTGCACTAAACAACTTGCTACCAGCATTCACTTTTATTCTTGCTGTCCTCTCCAGACAAGAGTATTTGAGAATCAAGACTAGGGCAGGGGTAGCGAAGGCCTTAGGGACAGTCCTTAGTGTGGGTGGAGCAGTGCTTTTATCATTTTACCATGGAAAAGTACTTGGTCTAGGTGAATCAAAGATTCACTGGAGATATGCAGAAAACATGCAAAGAGAATCCTCTTCTTCTGGTGGTGGAAGAAACCATCTTCTGGGCCCTGTTGCTGTAATTGTTAGTGCTCTTGTTTGGGCAGTATGGTTCATAGTTCAAAAAAACATGAGCAAGAGCTATCCAGCTCCTTACACTAGCACTTTCTACATGTGTTTGATGGCAAGCATTCAGTGTGTGGTCATTGCCTTGGCTGCTGAACACAATGTCTCAGCTTGGTCACTCCACAGTACTATAAGACTAACCTCTGCTCTTTATGCGGGGACTATTTCTACTGCGCTAGCGTATGTGCTCCTTGCGTGGACCATTGAGAGGAAAGGTCCTCTCTATGTGTCTGTGTTCTCCCCTTTGCTGCTTGTCATCATTGCTGTTGCTAGCTGGGCTTTTCTTCACGAGCAATTATACGTTGGCACTGTCATAGGGTCTCTGCTGATAGTGTTGGGGCTGTATTTTGTTCTGTGGGGAAAGAACAAAGAGATGAATAAGATAGACGTTGTTGAAGTTGAAGGCACGGTCATGGAGGCAATAAAGGATAGCGAGAAGGATGAGGTGAAAGACCTGGAATTGCAACCCTATGAATATGATCCTTCCAACGTTAACGAGATGGGGTTGTCTTTCACCAAGCTTTTTAGCCGGCTCTTTGCCAAGAAAGAGATGCGTATTCTCATGGTAGGTCTTGATGCTGCTGGTAAGACTACCATCTTGTACAAGCTCAAGCTGGGAGAAATTGTCACAACCATTCCCACAATTGGATTTAATGTGGAGACTGTGGAATATAAGAATATTAGCTTTACTGTATGGGATGTGGGTGGCCAAGATAAGATTCGTCCTTTATGGAGACACTACTTCCAAAACACTCAGGGGCTTATCTTTGTTGTGGATAGCAATGATCGTGACCGTGTTGTTGAGGCTAGAGATGAGCTCCACCGGATGTTGAATGAGGATGAGTTGAGAGATGCTGTTCTCCTGGTATTTGCCAACAAACAAGATCTTCCAAATGCTATGAATGCTGCAGAAATCACAGACAAGCTTGGTCTTCATTCTCTTCGCCAACGCCACTGGTATATCCAGAGCACATGTGCTACCTCTGGGGAAGGACTATATGAAGGACTGGAGTGGCTCTCCAACAATATAGCTAACAAGGCTTAG

Predicted protein sequences of Glyma10g28581

Limit To All Plant Sequences

>Glyma10g28581.1   sequence type=predicted peptide   gene model=Glyma10g28581   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSVIPLLAMIIVQLGYAGMNITSKLAIQSGMHPLVLVAYRQIFATISLAPFAFWLERNTAPRMTKHIAFQILLSSLTGVTGNQILYFLGLKYSTPTIACALNNLLPAFTFILAVLSRQEYLRIKTRAGVAKALGTVLSVGGAVLLSFYHGKVLGLGESKIHWRYAENMQRESSSSGGGRNHLLGPVAVIVSALVWAVWFIVQKNMSKSYPAPYTSTFYMCLMASIQCVVIALAAEHNVSAWSLHSTIRLTSALYAGTISTALAYVLLAWTIERKGPLYVSVFSPLLLVIIAVASWAFLHEQLYVGTVIGSLLIVLGLYFVLWGKNKEMNKIDVVEVEGTVMEAIKDSEKDEVKDLELQPYEYDPSNVNEMGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLEWLSNNIANKA*

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