Glyma10g28560 - SoyBase

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Report for Sequence Feature Glyma10g28560

Feature Type:	gene_model
Chromosome:	Gm10
Start:	37436390
stop:	37439940
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g28560

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G56700	AT	Annotation by Michelle Graham. TAIR10: Peptidase C15, pyroglutamyl peptidase I-like \| chr1:21256743-21257640 FORWARD LENGTH=219	SoyBase	E_val: 3.00E-113	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
KOG4755	KOG	Predicted pyroglutamyl peptidase	JGI		ISS
PTHR23402	Panther	PROTEASE FAMILY C15 PYROGLUTAMYL-PEPTIDASE I-RELATED	JGI		ISS
PF01470	PFAM	Pyroglutamyl peptidase	JGI		ISS
UniRef100_C6SWF8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SWF8_SOYBN	SoyBase	E_val: 1.00E-165	ISS
UniRef100_G7IAA5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pyrrolidone-carboxylate peptidase n=1 Tax=Medicago truncatula RepID=G7IAA5_MEDTR	SoyBase	E_val: 6.00E-138	ISS

Expression Patterns of Glyma10g28560

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g28560 not represented in the dataset	Glyma10g28560 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g28560

Paralog	Evidence	Comments
Glyma20g22630	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g28560 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g144800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g28560

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g28560

Limit To All Plant Sequences

>Glyma10g28560.2   sequence type=transcript   gene model=Glyma10g28560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATCTTAATCTTAATTAATTATGCTGTTTTCTGTTTGATCATCAATCAGCATGGTTTTGAATTTTGATGTCTGTCTGGTCTCGTGCTTTGGTCTAAGGCTTCTTTATTTCGGGGGTGTACTGTAATTCAGCCATAACATGCCCATGTGCTCAGTTCTCATATTTTTCTTTAAAAAAGCCATAGATGTGGTATTGAGAAAATACTTTTTCGCTGAAGCTCTGAATAACAGACCATCATCGACAGATGGGGTCTGAAGGTCCTCCAGCAGCTGTGGCAACAGTTCATGTAACAGGTTTCAGGAAATTCCATGGAGTTTCTGAGAATCCAACGGAGACAATTGTCAATAATTTGAATGAATATTTGAACAAGAAGAAGGGTTTGCCAAAAGGCTTAGTTATTGGGAGTTGCAGCATTCTTGAGACTGCAGGTCAAGGAGCACTCATTCCCCTCTACCAGACATTGAAGTCTGCCATTACTTCCAAGGAATCAGAATCTTCAAGTTCCAATAAAATTATTTGGCTGCATTTTGGGGTTAACAGTGCCGCAACGAGGTTTGCTATCGAGCGTCAAGCTGTCAACGAGGCTACCTTCCGCTGCCCTGATGAAATGGGATGGAAGCCCCAGAAAGTCCCTATTGTTCCTTCAGATGGTGCAATTACACGAATACGGGAGACTACCCTTCTTCCTGTGGAGGAGATCACCAAGGCCTTGGCAAATAAGGGCTATGATGTTATGACATCTGATGATGCAGGAAGGTTTGTGTGCAACTACGTTTACTATCATTCGCTTCGCTTTGCGGAGCAGAATGGGACTAAATCCCTTTTTGTGCACGTGCCACTCTTCTCTACAATCAATGAAGAGACACAGATGCAATTTGCTGCTTCCTTGCTAGAGGTACTTGCTTCGACATGCCAGTAACATCCGGCTCATGCAAATGTTCAGGTGTTGCCATGCTTATGAAAGTGGATGAGTGTACTTTGAATGAGATGCTATAAATTATGATTACAAGATGTTGTTTGGAAATGGAAAACGGTATATTGCAAATGGCATGTGTAGCAGAGGCGTTTGCTTTCATCAGTCAATGTTTCTGATTAAAAGGCTTCGGCAAATTGTCAAGACATGTTGACATCTTCAGTGTTACCTTGTGAATAAATGTTAGTTTTCCTTATCCTTAAGACTGTTCTTATTTTTCGTTGTAACTTGGTTATGAATGAATTAATACGATACACGTGTCCGAGTAAAATTGAAAGCTAATGATTCACTAAGTGTTTTCTCAGTTAGATTCTCAATATAGACTGATGAAGCT

>Glyma10g28560.3   sequence type=transcript   gene model=Glyma10g28560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AACATTATAACAATCTATTCATTACATTATTACTTACGACGTTATGCTTTGTTGTTTTGAAAGTGACTCCCACGTAGCCTACTCTTCTATTCCATTCTATTCTATATTCTTTCTCTCTCTCTCTCTCTTTTTTCTCTTAATAAATCTAATCGGAATCTTCACCAGTTAATCAGAGCTTTGAGTAGATAAGACTCGTGGATGTGTCATCTCCTTTATTCAACGTTGAATATTGTTATTATTCTTGCCCGGTATTGAGAAAATACTTTTTCGCTGAAGCTCTGAATAACAGACCATCATCGACAGATGGGGTCTGAAGGTCCTCCAGCAGCTGTGGCAACAGTTCATGTAACAGGTTTCAGGAAATTCCATGGAGTTTCTGAGAATCCAACGGAGACAATTGTCAATAATTTGAATGAATATTTGAACAAGAAGAAGGGTTTGCCAAAAGGCTTAGTTATTGGGAGTTGCAGCATTCTTGAGACTGCAGGTCAAGGAGCACTCATTCCCCTCTACCAGACATTGAAGTCTGCCATTACTTCCAAGGAATCAGAATCTTCAAGTTCCAATAAAATTATTTGGCTGCATTTTGGGGTTAACAGTGCCGCAACGAGGTTTGCTATCGAGCGTCAAGCTGTCAACGAGGCTACCTTCCGCTGCCCTGATGAAATGGGATGGAAGCCCCAGAAAGTCCCTATTGTTCCTTCAGATGGTGCAATTACACGAATACGGGAGACTACCCTTCTTCCTGTGGAGGAGATCACCAAGGCCTTGGCAAATAAGGGCTATGATGTTATGACATCTGATGATGCAGGAAGGTTTGTGTGCAACTACGTTTACTATCATTCGCTTCGCTTTGCGGAGCAGAATGGGACTAAATCCCTTTTTGTGCACGTGCCACTCTTCTCTACAATCAATGAAGAGACACAGATGCAATTTGCTGCTTCCTTGCTAGAGGTACTTGCTTCGACATGCCAGTAACATCCGGCTCATGCAAATGTTCAGGTGTTGCCATGCTTATGAAAGTGGATGAGTGTACTTTGAATGAGATGCTATAAATTATGATTACAAGATGTTGTTTGGAAATGGAAAACGGTATATTGCAAATGGCATGTGTAGCAGAGGCGTTTGCTTTCATCAGTCAATGTTTCTGATTAAAAGGCTTCGGCAAATTGTCAAGACATGTTGACATCTTCAGTGTTACCTTGTGAATAAATGTTAGTTTTCCTTATCCTTAAGACTGTTCTTATTTTTCGTTGTAACTTGGTTATGAATGAATTAATACGATACACGTGTCCGAGTAAAATTGAAAGCTAATGATTCACTAAGTGTTTTCTCAGTTAGATTCTCAATATAGACTGATGAAGCTATTCACAGTTCTGGTAGTTGAATTTTATCACTCAGATTACTAACTACTTCCTCGCCGTTTGGGGAAGTTCTTGGGTAGTTTTTTTTTTATCAGTTCTTCTTGTTGGGTAGGTTTGCTGAGACAGGGTGTTGAGTTTATGTGAAATAATTAAATTGGAATTATATATAACTT

Coding sequences of Glyma10g28560

Limit To All Plant Sequences

>Glyma10g28560.1   sequence type=CDS   gene model=Glyma10g28560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGTCTGAAGGTCCTCCAGCAGCTGTGGCAACAGTTCATGTAACAGGTTTCAGGAAATTCCATGGAGTTTCTGAGAATCCAACGGAGACAATTGTCAATAATTTGAATGAATATTTGAACAAGAAGAAGGGTTTGCCAAAAGGCTTAGTTATTGGGAGTTGCAGCATTCTTGAGACTGCAGGTCAAGGAGCACTCATTCCCCTCTACCAGACATTGAAGTCTGCCATTACTTCCAAGGAATCAGAATCTTCAAGTTCCAATAAAATTATTTGGCTGCATTTTGGGGTTAACAGTGCCGCAACGAGGTTTGCTATCGAGCGTCAAGCTGTCAACGAGGCTACCTTCCGCTGCCCTGATGAAATGGGATGGAAGCCCCAGAAAGTCCCTATTGTTCCTTCAGATGGTGCAATTACACGAATACGGGAGACTACCCTTCTTCCTGTGGAGGAGATCACCAAGGCCTTGGCAAATAAGGGCTATGATGTTATGACATCTGATGATGCAGGAAGGTTTGTGTGCAACTACGTTTACTATCATTCGCTTCGCTTTGCGGAGCAGAATGGGACTAAATCCCTTTTTGTGCACGTGCCACTCTTCTCTACAATCAATGAAGAGACACAGATGCAATTTGCTGCTTCCTTGCTAGAGGTACTTGCTTCGACATGCCAGTAA

>Glyma10g28560.2   sequence type=CDS   gene model=Glyma10g28560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGTCTGAAGGTCCTCCAGCAGCTGTGGCAACAGTTCATGTAACAGGTTTCAGGAAATTCCATGGAGTTTCTGAGAATCCAACGGAGACAATTGTCAATAATTTGAATGAATATTTGAACAAGAAGAAGGGTTTGCCAAAAGGCTTAGTTATTGGGAGTTGCAGCATTCTTGAGACTGCAGGTCAAGGAGCACTCATTCCCCTCTACCAGACATTGAAGTCTGCCATTACTTCCAAGGAATCAGAATCTTCAAGTTCCAATAAAATTATTTGGCTGCATTTTGGGGTTAACAGTGCCGCAACGAGGTTTGCTATCGAGCGTCAAGCTGTCAACGAGGCTACCTTCCGCTGCCCTGATGAAATGGGATGGAAGCCCCAGAAAGTCCCTATTGTTCCTTCAGATGGTGCAATTACACGAATACGGGAGACTACCCTTCTTCCTGTGGAGGAGATCACCAAGGCCTTGGCAAATAAGGGCTATGATGTTATGACATCTGATGATGCAGGAAGGTTTGTGTGCAACTACGTTTACTATCATTCGCTTCGCTTTGCGGAGCAGAATGGGACTAAATCCCTTTTTGTGCACGTGCCACTCTTCTCTACAATCAATGAAGAGACACAGATGCAATTTGCTGCTTCCTTGCTAGAGGTACTTGCTTCGACATGCCAGTAA

>Glyma10g28560.3   sequence type=CDS   gene model=Glyma10g28560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGTCTGAAGGTCCTCCAGCAGCTGTGGCAACAGTTCATGTAACAGGTTTCAGGAAATTCCATGGAGTTTCTGAGAATCCAACGGAGACAATTGTCAATAATTTGAATGAATATTTGAACAAGAAGAAGGGTTTGCCAAAAGGCTTAGTTATTGGGAGTTGCAGCATTCTTGAGACTGCAGGTCAAGGAGCACTCATTCCCCTCTACCAGACATTGAAGTCTGCCATTACTTCCAAGGAATCAGAATCTTCAAGTTCCAATAAAATTATTTGGCTGCATTTTGGGGTTAACAGTGCCGCAACGAGGTTTGCTATCGAGCGTCAAGCTGTCAACGAGGCTACCTTCCGCTGCCCTGATGAAATGGGATGGAAGCCCCAGAAAGTCCCTATTGTTCCTTCAGATGGTGCAATTACACGAATACGGGAGACTACCCTTCTTCCTGTGGAGGAGATCACCAAGGCCTTGGCAAATAAGGGCTATGATGTTATGACATCTGATGATGCAGGAAGGTTTGTGTGCAACTACGTTTACTATCATTCGCTTCGCTTTGCGGAGCAGAATGGGACTAAATCCCTTTTTGTGCACGTGCCACTCTTCTCTACAATCAATGAAGAGACACAGATGCAATTTGCTGCTTCCTTGCTAGAGGTACTTGCTTCGACATGCCAGTAA

Predicted protein sequences of Glyma10g28560

Limit To All Plant Sequences

>Glyma10g28560.1   sequence type=predicted peptide   gene model=Glyma10g28560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSEGPPAAVATVHVTGFRKFHGVSENPTETIVNNLNEYLNKKKGLPKGLVIGSCSILETAGQGALIPLYQTLKSAITSKESESSSSNKIIWLHFGVNSAATRFAIERQAVNEATFRCPDEMGWKPQKVPIVPSDGAITRIRETTLLPVEEITKALANKGYDVMTSDDAGRFVCNYVYYHSLRFAEQNGTKSLFVHVPLFSTINEETQMQFAASLLEVLASTCQ*

>Glyma10g28560.2   sequence type=predicted peptide   gene model=Glyma10g28560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSEGPPAAVATVHVTGFRKFHGVSENPTETIVNNLNEYLNKKKGLPKGLVIGSCSILETAGQGALIPLYQTLKSAITSKESESSSSNKIIWLHFGVNSAATRFAIERQAVNEATFRCPDEMGWKPQKVPIVPSDGAITRIRETTLLPVEEITKALANKGYDVMTSDDAGRFVCNYVYYHSLRFAEQNGTKSLFVHVPLFSTINEETQMQFAASLLEVLASTCQ*

>Glyma10g28560.3   sequence type=predicted peptide   gene model=Glyma10g28560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSEGPPAAVATVHVTGFRKFHGVSENPTETIVNNLNEYLNKKKGLPKGLVIGSCSILETAGQGALIPLYQTLKSAITSKESESSSSNKIIWLHFGVNSAATRFAIERQAVNEATFRCPDEMGWKPQKVPIVPSDGAITRIRETTLLPVEEITKALANKGYDVMTSDDAGRFVCNYVYYHSLRFAEQNGTKSLFVHVPLFSTINEETQMQFAASLLEVLASTCQ*

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