Glyma10g28530 - SoyBase

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Report for Sequence Feature Glyma10g28530

Feature Type:	gene_model
Chromosome:	Gm10
Start:	37420803
stop:	37425403
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g28530

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G26751	AT	Annotation by Michelle Graham. TAIR10: shaggy-related kinase 11 \| chr5:9399582-9401839 REVERSE LENGTH=405	SoyBase	E_val: 0	ISS
GO:0009933	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem structural organization	SoyBase	N/A	ISS
GO:0016310	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphorylation	SoyBase	N/A	ISS
GO:0042538	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
KOG0658	KOG	Glycogen synthase kinase-3	JGI		ISS
PTHR24057	Panther	GLYCOGEN SYNTHASE KINASE-3 ALPHA	JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_C7AE95	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glycogen synthase kinase n=1 Tax=Glycine max RepID=C7AE95_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1LB09	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LB09_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g28530

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g28530

Paralog	Evidence	Comments
Glyma20g22600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g28530 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g144600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g28530

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g28530

Limit To All Plant Sequences

>Glyma10g28530.3   sequence type=transcript   gene model=Glyma10g28530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTATGCCATTATCATCATCGATCTAACTCTAACTCTCTCTTTCTCTTCCTTCTAACCGCCGCTTCCGCATCTCGCTTCCTTCTCTTCCTTCTCTAACTATATATATTTTCTTTTTCTCTCTGTTTCTTCCTTTTTATTTTATGCTTTTTTCTCCGATGTGACTGGCGTTTGTTTGGTGTGTTTTTCGTGTGCGTCGAACCCTCTGCGTTCGTTAATTTTGTTTTGTGTTTTCGGATCGACTTGTTTCGCGTTCGGTTGCGGGGATCTTCGGTTTAGGTAAATGAGTGGTAAATGAGTGGTTTTTGAGCAGAAGCAGTTAAAAGAGAAAGGGATTCAGCGAAGATGACATCGGTTGGTGTGGCACCAACTTCGGGTTTGAGAGAAGCCAGTGGGCATGGAGCAGCAGGTGTTGATAGATTGCCAGAGGAGATGAACGATATGAAAATTAGGGATGATAGAGAAATGGAAGCCACAGTTGTTGATGGCAATGGAACGGAGACAGGACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGGCTAAGTGCTTGGAAACTGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAAGACAAGAGGTACAAGAACCGGGAGCTGCAAACAATGCGCCTTCTTGACCACCCAAATGTCGTTGCTTTGAAGCACTGTTTCTTTTCAACCACTGAAAAGGATGAACTATACCTTAATTTGGTTCTCGAGTATGTTCCTGAAACAGTTAATCGGGTGATAAAACATTACAACAAGTTGAACCAAAGGATGCCACTGATATATGTGAAACTCTATACATACCAGATCTTTAGGGCATTATCTTATATTCATCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTGGTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTGGTAAAAGGTGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCACCTGAGCTCATATTTGGCGCAACTGAATATACTACAGCCATTGACGTCTGGTCTGTTGGATGTGTTTTAGCTGAGCTGCTTCTTGGACAGCCTTTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATTATCAAGGTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTTTAGATGCCTTGACGCATCCTTTCTTTGACGAACTTCGTGATCCAAATTCTCGCTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGAACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATGCAAGGAAGCAATGCCCGTTTCTTGGCTTGTGAAGTGTAACAGAACTGCAAGTGTTGTTTCCATATGAGAATGCCGCGCTTTCCTTCTATTTAAAATGATATTTGTTGGTATCTTTATTGTATTCGGTTGCCCTGTAAAATCAGATTTAGAGATACATGCTACTCATTATCATCCTACCCCCCGATGGGTATGTAGTAGAATACCCTGTTTCCTGTATCACAGCAGATTGTAACATACAATAGAAGACAAAATGTCTGCAATTATCTGAATGTTGCATCAATATTTGTATTTGTTGAGACACTGATGGGTTGTTATTTAATTTAGTTATGCTTAGCGTGGTGGTTGGAAGTTGTAATGGCCTTGTCTGTGCATTTGTTTATTTTCCACTCTTTAGGTAAAGCTCTGACCAAACGACTTGGGACGAAGTCTTGGTGCTTGTCTTGTATATATTGCTCGATTGATCGTGATCGATGTTAATTTAATCAAACAGTTAGGATGACTTACCCTTTTTTAGTTTCAGTATTATTTTCAATTTGAGG

Coding sequences of Glyma10g28530

Limit To All Plant Sequences

>Glyma10g28530.1   sequence type=CDS   gene model=Glyma10g28530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACATCGGTTGGTGTGGCACCAACTTCGGGTTTGAGAGAAGCCAGTGGGCATGGAGCAGCAGGTGTTGATAGATTGCCAGAGGAGATGAACGATATGAAAATTAGGGATGATAGAGAAATGGAAGCCACAGTTGTTGATGGCAATGGAACGGAGACAGGACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGGCTAAGTGCTTGGAAACTGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAAGACAAGAGGTACAAGAACCGGGAGCTGCAAACAATGCGCCTTCTTGACCACCCAAATGTCGTTGCTTTGAAGCACTGTTTCTTTTCAACCACTGAAAAGGATGAACTATACCTTAATTTGGTTCTCGAGTATGTTCCTGAAACAGTTAATCGGGTGATAAAACATTACAACAAGTTGAACCAAAGGATGCCACTGATATATGTGAAACTCTATACATACCAGATCTTTAGGGCATTATCTTATATTCATCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTGGTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTGGTAAAAGGTGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCACCTGAGCTCATATTTGGCGCAACTGAATATACTACAGCCATTGACGTCTGGTCTGTTGGATGTGTTTTAGCTGAGCTGCTTCTTGGACAGCCTTTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATTATCAAGGTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTTTAGATGCCTTGACGCATCCTTTCTTTGACGAACTTCGTGATCCAAATTCTCGCTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGAACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATGCAAGGAAGCAATGCCCGTTTCTTGGCTTGTGA

>Glyma10g28530.3   sequence type=CDS   gene model=Glyma10g28530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACATCGGTTGGTGTGGCACCAACTTCGGGTTTGAGAGAAGCCAGTGGGCATGGAGCAGCAGGTGTTGATAGATTGCCAGAGGAGATGAACGATATGAAAATTAGGGATGATAGAGAAATGGAAGCCACAGTTGTTGATGGCAATGGAACGGAGACAGGACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGGCTAAGTGCTTGGAAACTGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAAGACAAGAGGTACAAGAACCGGGAGCTGCAAACAATGCGCCTTCTTGACCACCCAAATGTCGTTGCTTTGAAGCACTGTTTCTTTTCAACCACTGAAAAGGATGAACTATACCTTAATTTGGTTCTCGAGTATGTTCCTGAAACAGTTAATCGGGTGATAAAACATTACAACAAGTTGAACCAAAGGATGCCACTGATATATGTGAAACTCTATACATACCAGATCTTTAGGGCATTATCTTATATTCATCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTGGTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTGGTAAAAGGTGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCACCTGAGCTCATATTTGGCGCAACTGAATATACTACAGCCATTGACGTCTGGTCTGTTGGATGTGTTTTAGCTGAGCTGCTTCTTGGACAGCCTTTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATTATCAAGGTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTTTAGATGCCTTGACGCATCCTTTCTTTGACGAACTTCGTGATCCAAATTCTCGCTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGAACTGAAAGGTGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATGCAAGGAAGCAATGCCCGTTTCTTGGCTTGTGA

Predicted protein sequences of Glyma10g28530

Limit To All Plant Sequences

>Glyma10g28530.1   sequence type=predicted peptide   gene model=Glyma10g28530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTSVGVAPTSGLREASGHGAAGVDRLPEEMNDMKIRDDREMEATVVDGNGTETGHIIVTTIGGRNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVALKHCFFSTTEKDELYLNLVLEYVPETVNRVIKHYNKLNQRMPLIYVKLYTYQIFRALSYIHRCIGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDVWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRCTALDALTHPFFDELRDPNSRLPNGRFLPPLFNFKSHELKGVPAEILVKLVPEHARKQCPFLGL*

>Glyma10g28530.3   sequence type=predicted peptide   gene model=Glyma10g28530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTSVGVAPTSGLREASGHGAAGVDRLPEEMNDMKIRDDREMEATVVDGNGTETGHIIVTTIGGRNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVALKHCFFSTTEKDELYLNLVLEYVPETVNRVIKHYNKLNQRMPLIYVKLYTYQIFRALSYIHRCIGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDVWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRCTALDALTHPFFDELRDPNSRLPNGRFLPPLFNFKSHELKGVPAEILVKLVPEHARKQCPFLGL*

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