SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G02330 | AT | Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Hepatocellular carcinoma-associated antigen 59 (InterPro:IPR010756); Has 1239 Blast hits to 998 proteins in 204 species: Archae - 4; Bacteria - 71; Metazoa - 421; Fungi - 109; Plants - 87; Viruses - 5; Other Eukaryotes - 542 (source: NCBI BLink). | chr1:462202-463521 REVERSE LENGTH=279 | SoyBase | E_val: 4.00E-117 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG3345 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR13486 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR13486:SF2 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF07052 | PFAM | Hepatocellular carcinoma-associated antigen 59 | JGI | ISS | |
| UniRef100_B4FSC7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Hepatocellular carcinoma-associated antigen 59 family protein n=1 Tax=Zea mays RepID=B4FSC7_MAIZE | SoyBase | E_val: 4.00E-90 | ISS |
| UniRef100_C6TJK7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TJK7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma10g28030 not represented in the dataset |
Glyma10g28030 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g140000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g28030.1 sequence type=CDS gene model=Glyma10g28030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATGATTCGAAGCAGCAGCAGCAACGAAAAAAAAACTACCGAAAGAGAAGCGCTCCAACAGACGAAGATGAACTTCCTCAATCTCAAAGTAACAATGAATCCGACGACGAACGAGAAAGAAGAATGGCATTGGAGGAAATTAAGCTCCTCCAGAAGCAGCGGGAAAGGAAATCGGGAATTCCAGCAAACCCTAGTTTGCAGGTGCAGAGTGGAACCGGCGGCGGTTTAGCTGCTAAAGCCGCCGAAAAGAACGATGGCGATGGCGGCGACAAGGACGAGCTCGTTCTTCAAGACACCTTCGCTCAAGAGACCGCTGTTATGGATGAAGACCCCAATATGGTGAATTATATCGAGCACGAGTTAGCGAAGAAGAGGGGAAGGAAAATTGATGCAGCGGATCAAGCTGAGAATGAGCTGAAACGTGCTGAAGATGAACTATATAAGATCCCTGAGCATCTTAAAGTAAAAAGGCGAAATTCAGAAGAAAGCTCTACTCAGTGGACTACTGGTATTGCTGAGGTTCAGCTTCCAATCGAATATAAATTAAAAAATATTGAAGAAACAGAAGCCGCCAAAAAGCTTCTACAGGAAAAGAGGCTTATGGGTCGAACAAAATCAGATTTCAGCATTCCATCAAGTTACAGTGCTGATTATTTCCAGCGTGGCAGGGATTATGCGGAAAAACTTAGAAGAGAACATCCAGAGTTGTACAAAGATAGAAATCACCAGGATGATAGTTCTGGATCCAAGAAAAATGATTCCAGCACTGATGCAGCTGGAGCAGTCCAGAGGCAGGCTGCAACCGATGAATTCATGTTAGAGCGCTTCAGGAAACGAGAACGTCACCGTGTAATGCGAAGATGA
>Glyma10g28030.1 sequence type=predicted peptide gene model=Glyma10g28030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDDSKQQQQRKKNYRKRSAPTDEDELPQSQSNNESDDERERRMALEEIKLLQKQRERKSGIPANPSLQVQSGTGGGLAAKAAEKNDGDGGDKDELVLQDTFAQETAVMDEDPNMVNYIEHELAKKRGRKIDAADQAENELKRAEDELYKIPEHLKVKRRNSEESSTQWTTGIAEVQLPIEYKLKNIEETEAAKKLLQEKRLMGRTKSDFSIPSSYSADYFQRGRDYAEKLRREHPELYKDRNHQDDSSGSKKNDSSTDAAGAVQRQAATDEFMLERFRKRERHRVMRR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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