Glyma10g27920 - SoyBase

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Report for Sequence Feature Glyma10g27920

Feature Type:	gene_model
Chromosome:	Gm10
Start:	36723903
stop:	36725578
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g27920

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G18750	AT	Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein \| chr4:10304850-10307465 FORWARD LENGTH=871	SoyBase	E_val: 3.00E-100	ISS
GO:0010087	GO-bp	Annotation by Michelle Graham. GO Biological Process: phloem or xylem histogenesis	SoyBase	N/A	ISS
GO:0010305	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf vascular tissue pattern formation	SoyBase	N/A	ISS
GO:0010588	GO-bp	Annotation by Michelle Graham. GO Biological Process: cotyledon vascular tissue pattern formation	SoyBase	N/A	ISS
GO:0048366	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf development	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_D7M9F5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7M9F5_ARALL	SoyBase	E_val: 4.00E-98	ISS
UniRef100_I1LAU5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1LAU5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g27920

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g27920 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g138900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g27920

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g27920

Limit To All Plant Sequences

>Glyma10g27920.2   sequence type=CDS   gene model=Glyma10g27920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTACGAAAAATGGGATGTTACATTGAGGATGCACGTAGGATGTTTGACGAAATGTCGGATAGAGACTTGGCTTTATGGTCTGCCTTAATATGTGGGAACATGTGGAATTATGAGTGGCTTGAAGCGCTTCTACTATTCGGAAAGATGAGAGAACAAGGTCTGATGCCTGATTCGGTGATTGTAACATCTGTCTTACCAGTGTGTGGACGATTGGAGGCTGTGAAATTGGGGATGGCATTGCAAGGGTGTGCTGTGAGGAGTGGCTTTGAGAGTGATTTGTATTTCTCCTTCGCAATGATAGACATGTATTGTAAATGTGGTGATCCATTTGATGCCCATCGGGTGTTTAGTCGCATGGTTTATAAAGATGTAGTTTCTTGGAGTACCTCGATTGTTGGCTACTCACAGAACCGCCTATACCAAGAGAGTTATGAGTTGTATACTGGAATGGTAAATGTGGGTTTAGCAACAAATGCAATCGTTGTTGCAAGTGTTCTTCCTACTTTTGGAAAACTCAAGTTGTTGAAACAAAGGAAGGATATGCACAACTTTGTTCTTATAGAAGGACTCATGCCTAATGTTGTTGTAGGAAGTGCATTGATTGATATGTATGCTAATTGTGGGTCAATCAAGGAAGTAGAGTCAATATTTGAGTGCATGTCAAATAAGGATATCATGGTGTGGAATTCAGTGATAATAAGGTATAATTTAGTTGGTGACTCTGAGTCAACATTCTTTACCTTTAGAAGAATTTGGGGAGCTAAACATAGGCCAAATTCCATTACTTTAGTAAGCATCCTTCCTATATGCACCCAAATGGAAGCTTTTAGACAGGGAAAGGAAATCCATGGTTATGTGACCAAGACTAATATGTATAGCAAATGTGGATTTCTGGAACTCAGAGTGAAGATCTTTAAACAAATGATGGTAAGGAATGTCATAACATATAGCACTATGATCTCTGCCAGTGGAGCTCATGGCCTAGGTGAAAAGGGTTTGGCATTTTATGAGCAAATGGAGGAGGAAGGAATTAGACCAAACAAAGTCACTTTTATTTCACTGTTATCTGCATGTAGTCATGCATGTCTCTTTGACAGAGAAGATATGAAACACTACTTGTGCATGGTGGATCTCATTGGTACAACAGGAGATCTCGATGGTGCATACAAGTTCATCACAAGGATGCATATGACACCAGATGCTAATGTCTTGGGGAGCTTACTAGAGCGTATTTTCCAATTGAATCCTAATGATCCAGGCCATTATGTTCTTTTGTCAAATTTATATGCTTATGGGAAAAGATGGGAAGGCATGTCAAAGGTGAGAAAAATCATAAAAGATAAAGGGTTAGAGAAAAAACCAGGAAGTAGCTGGATTCAAGTGGGTCACCGCATTTATGTTTTCCATGCTACCAGTACCTTTCATCCGACATTTGCAAAGATTGAAGAGACTCTGAATAGCTTATTGTTAGTGATGAAAAGTGAAGACTGTATACTAACCAACGTTAATGATCAATTGTTGGGTAATCAACGCTCCCACAAATAA

Predicted protein sequences of Glyma10g27920

Limit To All Plant Sequences

>Glyma10g27920.2   sequence type=predicted peptide   gene model=Glyma10g27920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
LRKMGCYIEDARRMFDEMSDRDLALWSALICGNMWNYEWLEALLLFGKMREQGLMPDSVIVTSVLPVCGRLEAVKLGMALQGCAVRSGFESDLYFSFAMIDMYCKCGDPFDAHRVFSRMVYKDVVSWSTSIVGYSQNRLYQESYELYTGMVNVGLATNAIVVASVLPTFGKLKLLKQRKDMHNFVLIEGLMPNVVVGSALIDMYANCGSIKEVESIFECMSNKDIMVWNSVIIRYNLVGDSESTFFTFRRIWGAKHRPNSITLVSILPICTQMEAFRQGKEIHGYVTKTNMYSKCGFLELRVKIFKQMMVRNVITYSTMISASGAHGLGEKGLAFYEQMEEEGIRPNKVTFISLLSACSHACLFDREDMKHYLCMVDLIGTTGDLDGAYKFITRMHMTPDANVLGSLLERIFQLNPNDPGHYVLLSNLYAYGKRWEGMSKVRKIIKDKGLEKKPGSSWIQVGHRIYVFHATSTFHPTFAKIEETLNSLLLVMKSEDCILTNVNDQLLGNQRSHK*

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